BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492866
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily pro... 2612 0.0
> AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily protein
| chr4:10849782-10853346 REVERSE LENGTH=1924
Length=1924
Score = 2612 bits (1414), Expect = 0.0
Identities = 1604/1696 (95%), Gaps = 12/1696 (1%)
Strand=Plus/Plus
Query 121 TAATTAACTTTTATTTTGGCTCTGTTTTACATTCACAGGCCTCAAATACAACCCCA-TCG 179
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 236 TAATTAACTTTTCGTTTGGCTCTGTTTTACATTCACAGGCCTCAAGTATAACCCCATTC- 294
Query 180 GAATCCCTAAACAATAGAGAAGCTCAAAATCAAGATCAATTAGAGAGGAGGAAACCATGG 239
||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 295 GAATCCCTAAACAATAGAGAATCTCACAATCAAGATCAATT-CAGAGGAGGAAACCATGG 353
Query 240 AGCTAAGGAAAACTCAAGTGGCCATGCCGGTTTTCTTGGCGATAATGAGTCTAATGGTGA 299
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 354 AGCTAAGGAAATCTCAAGTGGCCATGCCTGTTTTCTTGGCAATAATGAGTCTAATGGTGA 413
Query 300 GTCAAGTGGTCTTCGCCGAGAAATATTCAGGTTCAATGTCCCCTCATGA-CAGGAAATTG 358
||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||
Sbjct 414 GTCAAGTGGTCTTCGCCGAGAAAGATTCAGGTTCAATGTCCCCTCATGATC-GGGCATTA 472
Query 359 GCAGAAATGCAAGCTCTTAAAGCTTCATTGGTTCGCCGAAATCTACCGGCTTTGGTATCT 418
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 473 GCAGAAATGCAAGCCCTTAAAGCTTCATTGGTTCGGCGAAATCTACCGGCTTTGGTATCT 532
Query 419 CCTCCTCCTACCCCTCCTCAGGCAGTACCCGGTCCGCGCGTGTACCAAGTGATATCATAT 478
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 533 CCTCCTCCTACCCCTCCTCAGGCCGTACCCGGTCCGCGCGTGTACCAAGTGATATCATAT 592
Query 479 GGTGCCGATCCCACAGGGAAATTGGATAGCACGGATGCAATATTAAAAGCTATGGAAGAC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGTGCCGATCCCACAGGGAAATTGGATAGCACGGATGCAATATTAAAAGCTATGGAAGAA 652
Query 539 GCATTTGATGGTCCAAATCATGGAGTTTTGATGCAAGGTATAAATGATCTCGGAGGAGCA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCATTTGATGGTCCAAATCATGGAGTTTTGATGCAAGGTATAAATGATCTCGGAGGAGCA 712
Query 599 AGAATCGATCTTCAAGGTGGAAGCTACTTAATCAGCCGTCCTCTACGATTTCCCTCAGCC 658
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 713 AGAATTGATCTTCAAGGTGGAAGCTACTTAATCAGCCGTCCTCTACGGTTTCCCTCAGCC 772
Query 659 GGCGTCGGAAATCTTCTCATAAGCGGAGGTACATTAAGAGCATCAAATGATTTTCCGGTC 718
|||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 773 GGCGCCGGAAATCTTCTTATAAGCGGAGGTACATTAAGAGCATCAAATGATTTCCCGGTC 832
Query 719 GATAGGTACTTAATCGAACTCAAAGACGAAAAGTCAAAATTACAATACATCTTCGAATAC 778
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 833 GATAGGTACTTAATCGAACTCAAAGACGAATCGTCAAAGTTACAATACATCTTCGAATAC 892
Query 779 ATAACTCTCAGAGATCTTCTCATCGACTGTAACTACCGCGGCGGAGCAATCGCCGTCATC 838
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 893 ATAACTCTCAGAGATCTTCTCATCGATTGCAACTACCGCGGCGGAGCAATCGCCGTCATC 952
Query 839 AATTCTCTCCGGACAAGCATTGACAACTGTTACATCACACGATTTGGAGACACGAACGGG 898
|| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 953 AACTCTCTCCGGACAAGCATAGACAACTGTTACATCACACGGTTCGGAGACACGAACGGG 1012
Query 899 ATTCTTGTCAAAAGCGGACACGAGACTTATATCCGAAACTCGTTTCTTGGTCAACACATA 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ATTCTTGTCAAAAGTGGACACGAGACTTATATCCGAAACTCGTTTCTTGGTCAACACATA 1072
Query 959 ACCGCCGGTGGAGACAGAGGAGAAAGAAACTTTTCCGGCACCGCCGTGAATTTGATGGGA 1018
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1073 ACCGCCGGTGGAGACAGAGGAGAAAGAAGCTTTTCCGGCACCGCCATCAATTTGATGGGA 1132
Query 1019 AACGATAACGCCGTTACTGACACCGTTATATTCTCCGCTAGGGTCGGAGTAATGATATCG 1078
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1133 AACGATAACGCCGTTACTGACACCGTTATATTCTCCGCCAGGATCGGAGTAATGGTATCG 1192
Query 1079 GGACAAGCAAACTTATTATCAGGTGTGCATTGTTATAACAAAGCAACCGGTTTTGGAGGA 1138
|||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||
Sbjct 1193 GGACAAGCTAACTTATTGTCCGGCGTGCATTGCTATAACAAAGCAACCGGTTTTGGAGGA 1252
Query 1139 ACCGGAATTTATTTGAGATTACCCGGTTTAACTCAGAACCGGATTGTGAATTCGTATTTG 1198
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ACCGGGATTTATTTGAGATTACCCGGTTTAACTCAGAACCGGATTGTGAATTCGTATTTG 1312
Query 1199 GATTATACCGGTATCGTCGCGGAAGATCCGGTTCAGCTACAGATTTCTGGGACAtttttt 1258
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1313 GATTATACCGGTATCGTCGCGGAAGATCCGGTTCAGTTACAGATTTCAGGGACGTTTTTT 1372
Query 1259 ttGGGAGATGCGTTTATTTTGTTGAAATCGATAGCCGGAG-TGGTTCGTGGGGTTAATAT 1317
||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1373 TTGGGAGATGCGTTTATTTTGTTGAAATCGATAGCCGGATATA-TTCGTGGGGTTAGTAT 1431
Query 1318 TGTTGACAATATGTTTTCCGGGTCGGGTCATGGGATCCAGATTGTGCAATTGGATCAGAA 1377
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1432 TGTTGACAATATGTTTTCCGGGTCGGGTCATGGGGTCCAGATTGTTCAATTGGATCAGAG 1491
Query 1378 GAACACGGCGTTTGAAGACGT-GGACCAGGTGGTTGTTGACCGGAACAGTGTGAACGGAA 1436
|||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct 1492 GAACACTGCGTTTGATGACGTTGG-CCAGGTGGTCGTTGACCGTAACAGTGTGAACGGAA 1550
Query 1437 TGGGAGAGAGATCGACGGTGGCTAGAGGATCGGTAGATGGAAACGGGACATCTTGGACCG 1496
||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1551 TGGTAGAGAAATCGACGGTGGCTAGAGGTTCGGTAGATGGAAACGGGACGTCTTGGACCG 1610
Query 1497 TTGATTTTAACCCGGTTTTGTTGTTCCCGGATTTAATCAAGCACGTGCAGTACACACTCG 1556
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1611 TTGATTTTAACCCGGTTTTGTTGTTCCCGGATTTAATCAACCACGTGCAGTACACACTTG 1670
Query 1557 TGGCGCGTGAAGCTGGTGCGTTTCCTCTACACGCGGTAAGGAACGTTTCTGGTAATCGAG 1616
||||| |||||||||| | ||||||||| |||||| ||||||||||||||| ||| || |
Sbjct 1671 TGGCGAGTGAAGCTGGCGTGTTTCCTCTGCACGCGCTAAGGAACGTTTCTGATAACCGGG 1730
Query 1617 TGGTCGTTGAGACAAACGCTCCTGTTACTGCAACAGTTTATGTAACAGTGAATCAAGGAG 1676
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1731 TGGTCGTTGAGACAAACGCTCCTGTTACTGGGACAGTTTATGTAACAGTGAATCAAGGAG 1790
Query 1677 TTTAATGTCGTGTTTTTGCCGtaataatggtttaataattttataaaatgatttatactt 1736
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1791 TTTAATGTCGTGTTTTTGCCGTT-TAATGGTTTTATAATTTTATAAAATGATTTATACTT 1849
Query 1737 ggtggttttttaattgtaatttttCCTGTAAGGAGGAAATTTATTTTT-ATACTGCTAAT 1795
| |||||||| | |||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 1850 GTTGGTTTTT-ATTTGTAATTTTTCCTGTAAGGGGGAAATTTATTTTTTATACAGCTAAT 1908
Query 1796 AAATGATAAAAACTCG 1811
||||||||||||||||
Sbjct 1909 AAATGATAAAAACTCG 1924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89607972825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5