BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492868
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20040.1 | Symbols: | Pectin lyase-like superfamily protein... 2451 0.0
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 95.3 2e-18
> AT4G20040.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:10847299-10849115 REVERSE LENGTH=1653
Length=1653
Score = 2451 bits (1327), Expect = 0.0
Identities = 1537/1639 (94%), Gaps = 12/1639 (1%)
Strand=Plus/Plus
Query 1 AAAAAATAAACCAAAAATTAATAACAGAGATTATTTGCC-TTT--T--A-ATACACACAC 54
|||||||||||||||| |||||||||||||||||||||| ||| | | ||||||||||
Sbjct 1 AAAAAATAAACCAAAATTTAATAACAGAGATTATTTGCCTTTTAATACATATACACACAC 60
Query 55 GCTCATATTTACCTGCAACTTCTTCATAATTATTCCTAACAAATtctctctct--ctcAC 112
|| ||||| |||||||| |||||||||||| |||||||| ||||||||||||| | |||
Sbjct 61 GCACATATCTACCTGCATCTTCTTCATAATCATTCCTAAGAAATTCTCTCTCTCACACAC 120
Query 113 TCAAGAACAAGAGACGAGTCAAGAAAAATCAGATGAGTCTCTATAGCTTTGTTAGCTTGT 172
|||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TCAAGAACAAGACAAGAGTCAAGAAAAATCAGATGAGTCTCTATAGCTTCATTAGCTTGT 180
Query 173 TGTTACTGTTTCTCATCACGATTTCAATGGAGTTTAAAGAGACATTATCTTTAAGAAGAG 232
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 181 TGTTACTGTTTCTCATCACGATTTCAATGGAGTTTAAAGAGACATCATCCTTAAGAAGAG 240
Query 233 ACATGACCAAGCTTTTAAAGTTCCAAGAAAAGATCCAAGAAAGACTCGCAGTCACTCCCA 292
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 241 ACATGACCAAGCTTTTAAAGCTCCAAGAGAAGATTCAAGAAAGACTCGCAGTCACTCCCA 300
Query 293 CTCTCTCGCCAGTGTCTTCTCCTTCTTCTCAATCTCCCAAAATGGTGGGGAAGGTGATAT 352
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 301 CTCTCTCACCAGTGTCTTCTCCTTCTTCTCACTCTCCCAAAATGGTTGGGAAGGTGATAT 360
Query 353 ACCCGATTGGTTAAGGAGCTGACCCTACAGGTGGACAAGACAGTAGTGACGCAATACTTG 412
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCCGATTGGTTACGGAGCTGACCCTACAGGTGGACAAGACAGTAGTGACGCAATACTTG 420
Query 413 AAGCTTTAACTGATGCTTTTCAGTTACAAACTGGACTTGAGATGCTGCCACGTGTCGCTG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCTTTAACTGATGCTTTTCAGTTACAAACTGGACTTGAGATGCTGCCACGTGTCGCTG 480
Query 473 ATCTAGGTGGTATAGTTATTGATCTCCAAGGTGGCAGTTACATGATCGGAAAACCTCTCA 532
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTAGGTGGTCTAGTTATTGATCTCCAAGGTGGCAGTTACATGATCGGAAAACCTCTCA 540
Query 533 GGTTCCCTTCCTCCGGCGGAGGAAATCTCGTGGTGAAAGGTGGGACTTTCCGGGCATCGG 592
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 541 GGTTCCCTTCCTCCGGTGGCGGAAATCTTGTGGTGAAAGGTGGGACTTTCCGGGCATCAG 600
Query 593 AAGTGTTTCCCGGTGATAGGCATTTGGTTGAGCTTGTGGCATCAAACTCCCGGAAAACAA 652
|| ||||||| |||||||||||||| ||||||||||| ||||||||| | |||| |||
Sbjct 601 AACTGTTTCCTGGTGATAGGCATTTAGTTGAGCTTGTAGCATCAAACGCTAAGAAACCAA 660
Query 653 TGAAAATGTCGCCGGAGGAGTCTTTCTCCGATCAGAAAGACCAGAGCTCTGGGATCTTCT 712
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAAAATGTCGCCAGAGGAGTCTTTCTCCGATCAGAAAGACCAGAGCTCTGGGATCTTCT 720
Query 713 ATGAGGACGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAGGTGGTATTT 772
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGAGGATGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAGGTGGTATTT 780
Query 773 TGGTGATTGACTCGGCTCGTATCCGTATAACCAATTGCTACTTCCTCCATTTCACAACAC 832
||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 781 TGGTGATTGACTCAGCTCGTATCCGTATAACCAATTGTTATTTCCTCCATTTCACAACGC 840
Query 833 AAGGGATTAAAGTCCAAGGAGGTCATGAGACATACATTTCAAACTCCTTCTTGGGGCAAC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGGGATTAAAGTCCAAGGAGGTCATGAGACATACATTTCAAACTCCTTCTTGGGGCAAC 900
Query 893 ATTCAACGGTAGGAGGAGACAGAGAAGAAAGAGGATTTTCCGGGACAGGAATCGATATCT 952
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 901 ATTCAACGGTAGGAGGAGACAGAGAAGAAAGAGGATTTACTGGGACAGGAATCGATATCT 960
Query 953 CTAGTAACGATACTGCCATTACGGATGTAGTGATTTTCTCGGCTGGTATCGGTATCTCTT 1012
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGAGTAACGACAATGCCATTACGGATGTAGTGATTTTCTCGGCTGGTATCGGTATCTCTT 1020
Query 1013 TGAACGGCGGGGCGAATATGGTTACAGGCGTGCATTGCTACAATAAAGCTACATGGTTTG 1072
|||| || || || ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1021 TGAATGGTGGTGCAAATATGGTTACGGGTGTGCATTGCTACAATAAAGCTACATGGTTTG 1080
Query 1073 GTGGAATCGGCATTCTTGTGAAATCGCATTTAACTAGGATAGATAATTGTTACCTTGATT 1132
|||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1081 GTGGCATTGGCATTCTAGTGAAATCACATTTAACGAGGATAGATAATTGTTACCTTGATT 1140
Query 1133 ACACAAGTATAGTCATTGAAGATCCTGTCCATGTTCATGTTACAAATGCTTTGTTCTTAG 1192
||||| |||||||||| ||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1141 ACACAGGTATAGTCATAGAAGACCCTGTCCATGTTCATGTCACCAATGCTTTGTTCTTAG 1200
Query 1193 GAGATGCGAATATCGTCTTGAGATCGGTGCACGGGAAGATTTTCGGTGTAAACATCGTCA 1252
||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1201 GAGATGCAAACATCGTCTTGAGATCGGTACACGGGAAGATTTCCGGTGTAAACATCGTCA 1260
Query 1253 ATAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCAATTGTCAAGCTAGAAGGAGAGT 1312
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1261 ACAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCGATTGTCAAGCTAGAAGGAGAGT 1320
Query 1313 TTCATGATATTGATCAAGTTGTGATTGATCAGAACAATGCAGAAGGGATGATGTTGAAAT 1372
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1321 TTCATGATATTAATCAAGTTGTGATTGATCAAAACAATGCAGAAGGGATGATGCTGAAAT 1380
Query 1373 CAACAACCGGAAAGGCCAAGGTTTCCGCGAATGGGACAAGATGGATCGCTGATTTTTCCT 1432
|||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1381 CAACAACCGGAAAGGCCATGGTTTCCGCAAATGGAACACGATGGATCGCTGATTTTTCCC 1440
Query 1433 CTGTTTTGGTATTCCCAAACCTGATAAACCATTACCAGCATTCGTTTTTCTCTCAATCCG 1492
|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1441 CTGTTTTGGTATTCCCTAACCGGATAAACCATTACCAGCATTCGTTTTTCGCTCAATCCG 1500
Query 1493 GGCAGATACCAGCAAATGCAGTGACCAATGTTTCCAACAATGTGGTAGTTGTAGAAACCG 1552
| ||||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 1501 GACAGATCCCTGCAAATGCAGTGACCAATGTCTCCAACAATATGGTGGTTGTAGAAACCG 1560
Query 1553 ATAGAGCTGTAACTGGAACCGTGTCAATAATTGTTTACCAGTAAACCATCATTCTT-AGT 1611
||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| |
Sbjct 1561 ATAGAGCTGTAACTGGAACCGTGTCAATAATTGCTTATCAGTAAAACAACATTCTTCAC- 1619
Query 1612 ATTGATCAT-TGTCCTAAT 1629
||||||||| | |||||||
Sbjct 1620 ATTGATCATAT-TCCTAAT 1637
> AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846315-10847392 FORWARD LENGTH=652
Length=652
Score = 95.3 bits (51), Expect = 2e-18
Identities = 71/80 (89%), Gaps = 4/80 (5%)
Strand=Plus/Minus
Query 1552 GATAGAGCTGTAACTGGAACCGTGTCAATAATTGTTTACCAGTAAACCATCATTCTT-AG 1610
|||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| |
Sbjct 652 GATAGAGCTGTAACTGGAACCGTGTCAATAATTGCTTATCAGTAAAACAACATTCTTCAC 593
Query 1611 TATTGATCAT-TGTCCTAAT 1629
||||||||| | |||||||
Sbjct 592 -ATTGATCATAT-TCCTAAT 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5