BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492868 Length=1629 Score E Sequences producing significant alignments: (Bits) Value AT4G20040.1 | Symbols: | Pectin lyase-like superfamily protein... 2451 0.0 AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 95.3 2e-18 > AT4G20040.1 | Symbols: | Pectin lyase-like superfamily protein | chr4:10847299-10849115 REVERSE LENGTH=1653 Length=1653 Score = 2451 bits (1327), Expect = 0.0 Identities = 1537/1639 (94%), Gaps = 12/1639 (1%) Strand=Plus/Plus Query 1 AAAAAATAAACCAAAAATTAATAACAGAGATTATTTGCC-TTT--T--A-ATACACACAC 54 |||||||||||||||| |||||||||||||||||||||| ||| | | |||||||||| Sbjct 1 AAAAAATAAACCAAAATTTAATAACAGAGATTATTTGCCTTTTAATACATATACACACAC 60 Query 55 GCTCATATTTACCTGCAACTTCTTCATAATTATTCCTAACAAATtctctctct--ctcAC 112 || ||||| |||||||| |||||||||||| |||||||| ||||||||||||| | ||| Sbjct 61 GCACATATCTACCTGCATCTTCTTCATAATCATTCCTAAGAAATTCTCTCTCTCACACAC 120 Query 113 TCAAGAACAAGAGACGAGTCAAGAAAAATCAGATGAGTCTCTATAGCTTTGTTAGCTTGT 172 |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 TCAAGAACAAGACAAGAGTCAAGAAAAATCAGATGAGTCTCTATAGCTTCATTAGCTTGT 180 Query 173 TGTTACTGTTTCTCATCACGATTTCAATGGAGTTTAAAGAGACATTATCTTTAAGAAGAG 232 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 181 TGTTACTGTTTCTCATCACGATTTCAATGGAGTTTAAAGAGACATCATCCTTAAGAAGAG 240 Query 233 ACATGACCAAGCTTTTAAAGTTCCAAGAAAAGATCCAAGAAAGACTCGCAGTCACTCCCA 292 |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| Sbjct 241 ACATGACCAAGCTTTTAAAGCTCCAAGAGAAGATTCAAGAAAGACTCGCAGTCACTCCCA 300 Query 293 CTCTCTCGCCAGTGTCTTCTCCTTCTTCTCAATCTCCCAAAATGGTGGGGAAGGTGATAT 352 ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 301 CTCTCTCACCAGTGTCTTCTCCTTCTTCTCACTCTCCCAAAATGGTTGGGAAGGTGATAT 360 Query 353 ACCCGATTGGTTAAGGAGCTGACCCTACAGGTGGACAAGACAGTAGTGACGCAATACTTG 412 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACCCGATTGGTTACGGAGCTGACCCTACAGGTGGACAAGACAGTAGTGACGCAATACTTG 420 Query 413 AAGCTTTAACTGATGCTTTTCAGTTACAAACTGGACTTGAGATGCTGCCACGTGTCGCTG 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGCTTTAACTGATGCTTTTCAGTTACAAACTGGACTTGAGATGCTGCCACGTGTCGCTG 480 Query 473 ATCTAGGTGGTATAGTTATTGATCTCCAAGGTGGCAGTTACATGATCGGAAAACCTCTCA 532 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATTTAGGTGGTCTAGTTATTGATCTCCAAGGTGGCAGTTACATGATCGGAAAACCTCTCA 540 Query 533 GGTTCCCTTCCTCCGGCGGAGGAAATCTCGTGGTGAAAGGTGGGACTTTCCGGGCATCGG 592 |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| | Sbjct 541 GGTTCCCTTCCTCCGGTGGCGGAAATCTTGTGGTGAAAGGTGGGACTTTCCGGGCATCAG 600 Query 593 AAGTGTTTCCCGGTGATAGGCATTTGGTTGAGCTTGTGGCATCAAACTCCCGGAAAACAA 652 || ||||||| |||||||||||||| ||||||||||| ||||||||| | |||| ||| Sbjct 601 AACTGTTTCCTGGTGATAGGCATTTAGTTGAGCTTGTAGCATCAAACGCTAAGAAACCAA 660 Query 653 TGAAAATGTCGCCGGAGGAGTCTTTCTCCGATCAGAAAGACCAGAGCTCTGGGATCTTCT 712 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TGAAAATGTCGCCAGAGGAGTCTTTCTCCGATCAGAAAGACCAGAGCTCTGGGATCTTCT 720 Query 713 ATGAGGACGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAGGTGGTATTT 772 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 ATGAGGATGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAGGTGGTATTT 780 Query 773 TGGTGATTGACTCGGCTCGTATCCGTATAACCAATTGCTACTTCCTCCATTTCACAACAC 832 ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 781 TGGTGATTGACTCAGCTCGTATCCGTATAACCAATTGTTATTTCCTCCATTTCACAACGC 840 Query 833 AAGGGATTAAAGTCCAAGGAGGTCATGAGACATACATTTCAAACTCCTTCTTGGGGCAAC 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AAGGGATTAAAGTCCAAGGAGGTCATGAGACATACATTTCAAACTCCTTCTTGGGGCAAC 900 Query 893 ATTCAACGGTAGGAGGAGACAGAGAAGAAAGAGGATTTTCCGGGACAGGAATCGATATCT 952 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 901 ATTCAACGGTAGGAGGAGACAGAGAAGAAAGAGGATTTACTGGGACAGGAATCGATATCT 960 Query 953 CTAGTAACGATACTGCCATTACGGATGTAGTGATTTTCTCGGCTGGTATCGGTATCTCTT 1012 | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CGAGTAACGACAATGCCATTACGGATGTAGTGATTTTCTCGGCTGGTATCGGTATCTCTT 1020 Query 1013 TGAACGGCGGGGCGAATATGGTTACAGGCGTGCATTGCTACAATAAAGCTACATGGTTTG 1072 |||| || || || ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1021 TGAATGGTGGTGCAAATATGGTTACGGGTGTGCATTGCTACAATAAAGCTACATGGTTTG 1080 Query 1073 GTGGAATCGGCATTCTTGTGAAATCGCATTTAACTAGGATAGATAATTGTTACCTTGATT 1132 |||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1081 GTGGCATTGGCATTCTAGTGAAATCACATTTAACGAGGATAGATAATTGTTACCTTGATT 1140 Query 1133 ACACAAGTATAGTCATTGAAGATCCTGTCCATGTTCATGTTACAAATGCTTTGTTCTTAG 1192 ||||| |||||||||| ||||| ||||||||||||||||| || |||||||||||||||| Sbjct 1141 ACACAGGTATAGTCATAGAAGACCCTGTCCATGTTCATGTCACCAATGCTTTGTTCTTAG 1200 Query 1193 GAGATGCGAATATCGTCTTGAGATCGGTGCACGGGAAGATTTTCGGTGTAAACATCGTCA 1252 ||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1201 GAGATGCAAACATCGTCTTGAGATCGGTACACGGGAAGATTTCCGGTGTAAACATCGTCA 1260 Query 1253 ATAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCAATTGTCAAGCTAGAAGGAGAGT 1312 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1261 ACAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCGATTGTCAAGCTAGAAGGAGAGT 1320 Query 1313 TTCATGATATTGATCAAGTTGTGATTGATCAGAACAATGCAGAAGGGATGATGTTGAAAT 1372 ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 1321 TTCATGATATTAATCAAGTTGTGATTGATCAAAACAATGCAGAAGGGATGATGCTGAAAT 1380 Query 1373 CAACAACCGGAAAGGCCAAGGTTTCCGCGAATGGGACAAGATGGATCGCTGATTTTTCCT 1432 |||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||| Sbjct 1381 CAACAACCGGAAAGGCCATGGTTTCCGCAAATGGAACACGATGGATCGCTGATTTTTCCC 1440 Query 1433 CTGTTTTGGTATTCCCAAACCTGATAAACCATTACCAGCATTCGTTTTTCTCTCAATCCG 1492 |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1441 CTGTTTTGGTATTCCCTAACCGGATAAACCATTACCAGCATTCGTTTTTCGCTCAATCCG 1500 Query 1493 GGCAGATACCAGCAAATGCAGTGACCAATGTTTCCAACAATGTGGTAGTTGTAGAAACCG 1552 | ||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||| Sbjct 1501 GACAGATCCCTGCAAATGCAGTGACCAATGTCTCCAACAATATGGTGGTTGTAGAAACCG 1560 Query 1553 ATAGAGCTGTAACTGGAACCGTGTCAATAATTGTTTACCAGTAAACCATCATTCTT-AGT 1611 ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| | Sbjct 1561 ATAGAGCTGTAACTGGAACCGTGTCAATAATTGCTTATCAGTAAAACAACATTCTTCAC- 1619 Query 1612 ATTGATCAT-TGTCCTAAT 1629 ||||||||| | ||||||| Sbjct 1620 ATTGATCATAT-TCCTAAT 1637 > AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:10846315-10847392 FORWARD LENGTH=652 Length=652 Score = 95.3 bits (51), Expect = 2e-18 Identities = 71/80 (89%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 1552 GATAGAGCTGTAACTGGAACCGTGTCAATAATTGTTTACCAGTAAACCATCATTCTT-AG 1610 |||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| | Sbjct 652 GATAGAGCTGTAACTGGAACCGTGTCAATAATTGCTTATCAGTAAAACAACATTCTTCAC 593 Query 1611 TATTGATCAT-TGTCCTAAT 1629 ||||||||| | ||||||| Sbjct 592 -ATTGATCATAT-TCCTAAT 575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80471473635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5