BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492869
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 867 0.0
> AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846315-10847392 FORWARD LENGTH=652
Length=652
Score = 867 bits (469), Expect = 0.0
Identities = 526/554 (95%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 1 CTCTCTATCTCCGGCGACTGGGAATTATGTGGTCGGCGACGTTATCTTTCCCTTCTTTTG 60
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 22 CTCTCTATTTCCGGCGACTGTGAATTATGTGGTCGGCGACGTTATCTTTCCCTTCTTTTG 81
Query 61 TGGCTTCTTCATCTTCTCTACCAAATTACAGAAACCGTAGGTTTCCGAAGATTAAAGCTT 120
|||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||
Sbjct 82 TGGCTTCTTCATCTTCTCTACCTAATTACAGGAACCTTAGGTTTCCAAAGATTAAAGCTT 141
Query 121 CGCTTTTTAATTACCCTCTTGCGAGCAAAATCATGGTCAGAAATTTACCGTTTTCTACAA 180
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CGCTCTTTAATTACCCTCTAGCGAGCAAAATCATGGTCAGAAATTTACCGTTTTCTACAA 201
Query 181 GTGAAGATTTTCTAAAGAGGGAGTTTTCAGCTTTTGGAGAGATAGCTGAAGTTAAGCTTA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GTGAAGATTTTCTAAAGAGAGAGTTTTCAGCTTTTGGAGAGATAGCTGAAGTTAAGCTTA 261
Query 241 TCAAAGATGAGTCAATGAAGAGATCAAAAGGTTATGCTTTTATTCAGTTCACGTCTCAAG 300
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 262 TCAAAGATGAGGCAATGAAGAGATCAAAAGGTTATGCTTTTATTCAATTCACGTCTCAAG 321
Query 301 ATGATGCTTTTCTTGCCATTGAGACCATGGACCGTCGGATGTATAATGGTAGGATGATTT 360
||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||
Sbjct 322 ATGATGCTTTTCTTGCCATAGAGACCATGGACCGTCGGATGTACAATGGCAGAATGATTT 381
Query 361 ATATAGACATTGCAAAACCCGGGAAACGTGATTTCCAAGGACTGCCGAGGACTTCCGGTC 420
||||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 382 ATATAGACATTGCGAAACCAGGTAAACGTGATTTCCAAGGACTGCCTAGGACTTCTGGTC 441
Query 421 CCCCTGCGAAGTCGGATGTGCCAGAAGAAGCTGCTAATGATGAGGTTGCTGATTGCTGGT 480
| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 442 CACCTGAGAAGTCGGATGAGCCAGAAGAAGCCGCTAATGATGAGGTTGCTGATTGCTGGT 501
Query 481 ATTAATTGTTAGTATCAAGCTC-CTCAAACTGTAACTGAACTTGCATAAATCAGATGTCA 539
|||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct 502 ATTAGTTGTTAGTATCAAGCTCAC-CAAACTGTAACTGAACTTGTATAAATCAGATGTCA 560
Query 540 AATCATGCTTTCTT 553
||||||||||||||
Sbjct 561 AATCATGCTTTCTT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26523629616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5