BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492871
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1299 0.0
> AT4G20020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44780.1);
Has 28928 Blast hits to 16023 proteins in 1033 species: Archae
- 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants
- 3091; Viruses - 205; Other Eukaryotes - 3072 (source:
NCBI BLink). | chr4:10844402-10846147 REVERSE LENGTH=1353
Length=1353
Score = 1299 bits (703), Expect = 0.0
Identities = 811/864 (94%), Gaps = 4/864 (0%)
Strand=Plus/Plus
Query 22 CGATGGCTATGTTATCTCACCGTATCAGACGAGCTTTACTCACGGCGACTTCCTATGTTA 81
||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 61 CGATGGCTATGATATCTCACCGTCTCCGACGAGCTTTACTCACTGCGACTTCCTATGTTA 120
Query 82 ACCGATCAATCGGCACTTCCG-TTTCACCAGCGTCCGATTTCCCTTCTGTGTCGGCGGCG 140
|||||||||| || ||| || | |||||||||| ||||||||||||||||||||||||
Sbjct 121 ACCGATCAATTAGCTCTT-CGATCACACCAGCGTCTGATTTCCCTTCTGTGTCGGCGGCG 179
Query 141 GTGTTACAGAGATCCGTTTTAGGGCGTTCGACGGAAGTAGCTACTCGAGCTCCGGCGAGA 200
|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 GTGTTAAAGAGATCCGTTATAGGGCGTTCGACGGAAGTAGCTACTCGAGCACCGGCGAGA 239
Query 201 CTGTATTCGACGAGGCAGTACAAGCTTTACAAAGAAGGTGATGAGATCACGGAAGACACT 260
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTGTTTTCAACGAGGCAGTACAAGCTTTACAAAGAAGGTGATGAGATCACGGAAGACACT 299
Query 261 GTGTTGTTCGAAGGGTGTGATTATAATCATTGGCTTATCACTATGGATTTTTCCAAAGAG 320
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 300 GTGTTGTTCGAAGGATGTGATTATAATCACTGGCTTATCACTATGGATTTCTCCAAAGAG 359
Query 321 GAAACTCCCAAGTCTCCAGAGGAAATGGTCTCTGCCTATGAAGAAACTTGTGCCCAAGGA 380
|||||||| ||||||||||| ||||||||| |||| |||||||||||||| |||||||||
Sbjct 360 GAAACTCCTAAGTCTCCAGAAGAAATGGTCGCTGCTTATGAAGAAACTTGCGCCCAAGGA 419
Query 381 CTTGGTATCAGTGTGGAAGAGGCAAAGAAAAGAATGTATGCTTGTAGCACAACTACTTAC 440
||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 420 CTTGGCATCAGCGTGGAAGAGGCTAAGCAAAGGATGTATGCTTGTAGCACAACTACTTAC 479
Query 441 CAAGGTTTTCAAGCAATCATGACTGAGCAAGAATCAGAAAAGTTCAAGGATCTGCCCGGA 500
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 480 CAAGGATTTCAAGCAATCATGACTGAACAAGAATCAGAAAAGTTCAAGGATCTACCCGGA 539
Query 501 GTTGTCTTCATATTACCAGATTCCTACATTGATCCCCAGAACAAAGAGTATGGAGGAGAC 560
|| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGGTTTTCATCTTGCCAGATTCCTACATTGATCCCCAGAACAAAGAGTATGGAGGAGAT 599
Query 561 AAATACGAGAATGGAGTGATCACACACAGGCCACCACCGATTCAGAGTGGCAGACCAAGA 620
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 600 AAATACGAGAATGGAGTGATAACACACAGGCCACCACCGATTCAGAGTGGCAGAGCAAGA 659
Query 621 CCCCGTCCTAGATTTGACCGTTCAGGAGGAGGAGGTGGTGGTCCCCAAAACTTCCAAAGA 680
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 CCTCGTCCTAGATTTGACCGTTCAGGAGGAGGAAGTGGTGGTCCCCAAAACTTCCAAAGA 719
Query 681 AACACACAGTATGGTCAGCAACCACCAATGCAAGGTGGTGGAGGGAGCTTTGGTCCTCAA 740
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 AACACACAGTATGGTCAGCAACCACCAATGCAAGGTGGTGGAGGGAGCTATGGTCCTCAA 779
Query 741 CAGGGCTATGGCTCTCCAGGACAGGGTCAGGGAATTCAAGGGCCTCCACCATTTCAAGGA 800
|||||||||| | |||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 780 CAGGGCTATGCCACTCCAGGACAAGGTCAGGGAACTCAAGCGCCTCCACCATTTCAAGGA 839
Query 801 GGTTACAACCAAGGCCC-AGGATCTCCACCGCCTCCATATCAGGCGGGTTACAATCAAGG 859
||||| ||||||||||| || ||||||||| |||||||||||||| ||||||||||||||
Sbjct 840 GGTTATAACCAAGGCCCGAG-ATCTCCACCACCTCCATATCAGGCAGGTTACAATCAAGG 898
Query 860 CCAGGGATCTCCAGTGCCTCCATA 883
||||||||||||||||||||||||
Sbjct 899 CCAGGGATCTCCAGTGCCTCCATA 922
Score = 538 bits (291), Expect = 5e-152
Identities = 357/389 (92%), Gaps = 4/389 (1%)
Strand=Plus/Plus
Query 789 CCATTTCAAGG-AGGTTACAACCAAGGCCCA-GGATCTCCACCGCCTCCATATCAGGCGG 846
|||| || ||| ||||||||| ||||| ||| ||||||||| ||||||||||||||| |
Sbjct 873 CCATATC-AGGCAGGTTACAATCAAGG-CCAGGGATCTCCAGTGCCTCCATATCAGGCAG 930
Query 847 GTTACAATCAAGGCCAGGGATCTCCAGTGCCTCCATACCAAGGAACACAAAGCAGTTACG 906
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GTTACAATCAAGTCCAGGGATCTCCAGTGCCTCCATACCAAGGAACACAAAGCAGTTACG 990
Query 907 GTCAAGGTGGACCTGGGAACTATAGCCAAGGGCCACAAGGAGGTTACAACCAAGGAGGAC 966
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 991 GTCAAGGTGGATCTGGGAACTATAGTCAAGGGCCACAAGGTGGTTACAACCAAGGAGGAC 1050
Query 967 CTAGGAATTACAGTCCACAGGGAGCTGGCAACTTCGGTCCTGCACCGGGAGCTGGAAACT 1026
|||||||||||| ||||||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 1051 CTAGGAATTACAATCCACAGGGAGCTGGAAACTTTGGTCCTGCATCTGGAGCTGGAAACT 1110
Query 1027 TTGGTCCTGCACCGGGAGCTGGAAATCCCGGTTATGGTCAAGGATATTCTGGACCTGGAC 1086
| ||||||||||| |||||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 1111 TAGGTCCTGCACCTGGAGCTGGAAATCCTGGCTATGGTCAGGGGTATTCTGGACCAGGAC 1170
Query 1087 AAGAGCAGAATCAAACATTTCCACAGACAAATCAGAGGAATCCAGACTGGAACAACAATA 1146
||||||||||||| ||||| |||||| || |||||||||||| |||||||||||||||||
Sbjct 1171 AAGAGCAGAATCAGACATTCCCACAGGCAGATCAGAGGAATCGAGACTGGAACAACAATA 1230
Query 1147 ATCCAGCTGGCCAGCCTGGGTCTGACCAA 1175
||||||| |||||||| ||||||||||||
Sbjct 1231 ATCCAGCAGGCCAGCCCGGGTCTGACCAA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5