BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492872
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20010.1 | Symbols: PTAC9, OSB2 | plastid transcriptionally ... 1820 0.0
> AT4G20010.1 | Symbols: PTAC9, OSB2 | plastid transcriptionally
active 9 | chr4:10841983-10844124 FORWARD LENGTH=1396
Length=1396
Score = 1820 bits (985), Expect = 0.0
Identities = 1256/1380 (91%), Gaps = 46/1380 (3%)
Strand=Plus/Plus
Query 1 AAATTTTTCCCCCTTTTGGTTTCAA--T-TTGTTTCCTTAAACCC-TCAAATaaaaaaaT 56
||||||| ||||||||| | ||||| | |||||||||||||||| || || | |||||
Sbjct 32 AAATTTTGCCCCCTTTT-GCTTCAATTTGTTGTTTCCTTAAACCCTTC-AA-AGCAAAAT 88
Query 57 TAGGGTTTCTCTT-GTTCTTCACGAAATT-GGGATTTGTTT-TCTAGTTGTTATGAAAAG 113
||||||||||||| ||| ||| | ||||| ||||||| ||| ||| ||| | ||||||||
Sbjct 89 TAGGGTTTCTCTTGGTT-TTCGC-AAATTAGGGATTT-TTTCTCTCGTTCTCATGAAAAG 145
Query 114 ATGAATTTGATTTCCAAATCATTGACAAGAATCGAAAT-TTCGCCATTTTTCCATCCCGG 172
|||| ||||||||||||||| ||| ||||||| | ||| |||||||||||| |||| |
Sbjct 146 ATGAGTTTGATTTCCAAATCCTTGGCAAGAATTG-AATGTTCGCCATTTTTTTATCCAAG 204
Query 173 AGCTTCAGAAATCACTACCGGAAAACGGATAACCTCTCCGCAAATCCGCTTT-TACACTG 231
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 205 AGCTTCAGAAATCACTACCGGAAAACGGATAACCTCTCCGCAAATCCG-TTTATACACTG 263
Query 232 CGGCGGCCGGCGGCGGGAGCACCAGAAATGGCGGAACGAAACAAAGAGCCAAACCACCGA 291
||||||||| |||||||| || ||||||| | || |||||||||||||||| |||||
Sbjct 264 CGGCGGCCGTCGGCGGGAAAACTGGAAATGGAGAAAGGAAACAAAGAGCCAAAGCACCGG 323
Query 292 CGAAAACTCCGGAGGCAGTGACACCTGTGAAAACGCTGGAAATTGCGCCAGTCA---CG- 347
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||
Sbjct 324 CGAAAACTCCGGAGGCAGTGACACCTGTGAAACCGCTGGAGATTGCGTCAGTCACGGCGA 383
Query 348 -G-C---GAA-G-A----CGCGGCCAAATGAGATAGCTTTCGAGACTGAAGTAGCGAATT 396
| | ||| | | | ||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 384 CGACGGAGAATGAATTGCCTCGGCCTAATGAGATAGCTTACGAGAGTGAAGTAGCGAATT 443
Query 397 GGGTGAATCTGATTGGATTTGTTGATCAACCAGTTCAATTCGAAGCTTCTTCTGATGGCA 456
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GGGTTAATCTGATTGGATTTGTTGATCAACCAGTTCAATTCGAAGCTTCTTCTGATGGCA 503
Query 457 AATTCTGGGCTGGTACTGTTATTTCCCAGAGGTCTGCTTCAGATTCCTCTGGTTTCTGGA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 AATTCTGGGCTGGTACTGTTATTTCCCAGAGGTCTGCTTCAGATTCCTCTGGTTTCTGGA 563
Query 517 TTCCGATAATATTTGAAGGTGATTTAGCTAAAACCGCAGCTCAATATATAAATAAAAACG 576
||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||| |||
Sbjct 564 TTCCGATAATATTTGAAGGCGATTTAGCTAAAACCGCAGCTCGATATGTAAGCAAAGACG 623
Query 577 ATCAAATTCATGTTTCTGGGAAGCTTTTTATAGATTCTCCTCCTCCAAATATGACTTATG 636
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 624 ATCAAATTCATGTGTCTGGGAAGCTGTTTATAGATTCTCCTCCTCCAAATATGACTTATG 683
Query 637 CACAAGCCAATGTTCAGGTGTTGGTCCAGAATCTTAACTTTCTACAGCCTACGTCTCCGT 696
||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 684 CACAAGCCAATGTTCAGGTATTGGTCCAGAATCTTAACTTTATACAGCCTATGTCCCCGT 743
Query 697 CTCCGTCGCCACTTATGGTTATATCGTCGTCTGAAAAGGAAGAAAGTGGCATCAAGAAGC 756
||||||||||| |||||||||| || || |||||||||||||||||||| ||||||||||
Sbjct 744 CTCCGTCGCCATTTATGGTTATGTCATCATCTGAAAAGGAAGAAAGTGGTATCAAGAAGC 803
Query 757 ACCCTGCTAGAGCTAAGAAGGATATAGTCATTGATGAAGCTTCAGATTCTTGGAATCACC 816
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGCCTGCTAGAGCTAAGCAGGATATAGTCATTGATGAAGCTTCAGATTCTTGGAATCACC 863
Query 817 TCATTGAGAATCCTAAAGAATGGTGGGATCACCGGGAAAATAAAGTCAACGGATTGGTAA 876
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 864 TCATTGAAAATCCTAAAGAATGGTGGGATCACCGGGAAAATAAAGTCAATGGATTGGTAA 923
Query 877 AACCAAGGCATCCTGATTTCAAAAGCAAGGACAGTAGTCTCTCATTGTGGCTCAATAAGG 936
|||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 924 AACCTAGGCATCCTGATTTCAAAAGCAAGGACAGTAGTTTTTCGCTGTGGCTCAATAAGG 983
Query 937 CTCCTAATTGGGTTTTGCCGAAACTCGAGGGACTCGAGTTTGATGTTCTAGTCCCTAAAG 996
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 984 CTCCTAATTGGGTTTTGCCAAAACTCGAAGGACTCGAGTTCGATGTTCTAGTCCCTAAAG 1043
Query 997 CCAGAGTTGTAAAACAACTTAAAGGAGAAGAATCATGGAAGGACTTGGTTCAAAACCCGG 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1044 CCAGAGTTGTAAAACAACTTAAAGGAGAAGAATCATGGAAGGACTTGGTTCAGAACCCAG 1103
Query 1057 ATAAGTGGTGGGACAATAGAATTGACAAGAGAAATGCAAAAGCCCCTGATTTCAAGCATA 1116
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1104 ATAAATGGTGGGACAATAGAATCGACAAGAGAAATGCAAAAGCCCCTGATTTCAAGCACA 1163
Query 1117 AGGAGACAGGTGAAGCACTGTGGCTAAATGAGTCTCCTACTTGGGTATTACCGAAACTGC 1176
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1164 AGGAGACAGGTGAAGCACTGTGGCTAAACGAGTCTCCTACTTGGGTATTACCGAAACTGC 1223
Query 1177 CACCAGTCAAGAAGAAACAAGAATGTATTGTCTGATTAGCTTTAGAAAGTTAGAAACATT 1236
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1224 CACCAGTCAAGAAGAAACAAGAAAGTATTGTCTT-TTAGCTTTAGAAA--------CATT 1274
Query 1237 ATCTCCATGTAAAGAGCTCGAATTGGTGTTTACAAAATTCATCATTTCTATTCAATGTGG 1296
||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 1275 ATCTCCATGTAAAGAGCTCCAA--G-TGTTTACAAAATTCATCATTTCTATTCAAAGTGG 1331
Query 1297 TCATTGAA-GTTCCATTTGATCTTTGGTTAGTAGACTCAATACAGTAGCTATAAGTGTGG 1355
|| || || ||||| |||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 1332 TC-TTCAAAGTTCCGTTTGATTTTTGGTTAGTAGACTGAATACAGTAGCTACAAGTGTGG 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5