BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492876
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19985.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1483 0.0
> AT4G19985.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr4:10830237-10832094 REVERSE LENGTH=1121
Length=1121
Score = 1483 bits (803), Expect = 0.0
Identities = 938/1003 (94%), Gaps = 9/1003 (1%)
Strand=Plus/Plus
Query 1 TTAGAAGCAAAAGTGGTTGATTTTCACCGAGAAATTTGACAGAAGTTTCCTCAGATGGTG 60
|||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 12 TTAGAAGCAAAAATGGTTGATTTTCTTCGAGAAATTTGACAGAACTTTCCCCAGATGGTG 71
Query 61 CATTATTGTGTGATCAAGATTGCTTAAAGAAATGGTTTTGGCGGTTTGTGTTGGTAATTC 120
||||||||||||| ||||||||||||| ||||||| ||||| || |||||||||||| ||
Sbjct 72 CATTATTGTGTGACCAAGATTGCTTAAGGAAATGGGTTTGGTGGGTTGTGTTGGTAAGTC 131
Query 121 TTCTCTTGTATCTATGGAACTGAGGTGGGCAAGAAGAAGAAAATCTGATAATGCTGCATC 180
|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 132 TTCTCTTGTATCTATGGAGTTGAGGTGGGCAAGGAGGAGAAAATCTGATAATGCTGCATC 191
Query 181 GGCATTGCCTCGGTCTATACCTATATATATCTCTACGTTGAAGAAAGACATCAATCTAGA 240
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 192 GGCATTGCCTCGATCGATACCTATATATATCTCTACGTTGAAGAAAGACATAAATCTAGA 251
Query 241 GGAATTGAGGAATTTGTATTCACTTTGTAACCATTCTTGCAACCGTTTGTCTGAGTATGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 252 GGAATTGAGGAATTTGTATTCACTTTGTAACCATTCTTGCAACCGTTTGTCTGAGAAAGA 311
Query 301 CAGCAACGTTGAAAAGATTGTTGACATGAAAAAGCTGCGT-GTAGCTATCTCCCGTAGTG 359
|||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct 312 CAGCAACGTTGAAAAGATTGTTGACATGAAAAAGCTGCGTAG-AGCTATCTCTCGCAGTG 370
Query 360 ATGTTGTTGTCTCTGTGTTTTGCAAACCTCATCACGCGGATGTTGATGATGCGGTTTTGT 419
||||| |||| ||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 371 ATGTTATTGTATCTGTGTTTTGCAAACCACAACACGTGGATGTTGATGATGCGGTTTTGT 430
Query 420 ATTCAGAAG-AG-AA-TTTGTCTTCTTCTTTGTATCA-TTCAGAATTTGGGAGACAGAAT 475
||||||||| || || ||| ||||||||||||||| | |||||||||||||||||| |||
Sbjct 431 ATTCAGAAGAAGAAAGTTTATCTTCTTCTTTGTAT-ACTTCAGAATTTGGGAGACAAAAT 489
Query 476 AAGGATGAGAGTTCTCTGGGAGACTTGTTTCAGAATGTGTTGCCTCTAACTCCTTCCAAT 535
|||||||| |||| ||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 490 AAGGATGATAGTTTTCTGGGAGACTTGTTTCAGAATGCGGTGCCTCTCACTCCTTCCAAT 549
Query 536 GGACAGCTTGTTGGATTCGGTCGTGCTTATTCTGATTATGGCTTGACTGCTTCTATCCAT 595
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 GGACAGCTTGTTGGATTCGGTCGTGCTTATTCTGATTATGGCTTGACCGCTTCTATCCAT 609
Query 596 GATCTAATGGTTTTACCTTCAATACAACGGATGGGAATCGGTAAACTGATAGTAAACAGA 655
||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||
Sbjct 610 GATCTAATGGTTTTACCTTCACTACAAAGGATGGGGATTGGTAAACTGATAGTAAACAGA 669
Query 656 ATTGTCAGGCTTCTCACAAGCAGAGACATCTACGACATAGCAGCTCTCTGCTTCGAAGAT 715
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 670 ATTGTCAGGCTACTCACAAGCAGAGACATTTACGACATAGCAGCTCTCTGCTTCGAGGAT 729
Query 716 GAAAGGCCGTTCTTCAAAGCCTGTGGGTTTGGAGATGACAGGATGGGTTCCACAACAATG 775
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 730 GAAAGGCCATTCTTCAAAGCATGTGGGTTTGGAGATGACAGGATGGGTTCCACAACAATG 789
Query 776 ATGTTCACAAAGAGCTTGGAGGCATAAAACCGAAGCGAGAACGCTGATAGACCTTCAGAA 835
||||||||||||||||||||||||||||| | ||||||||| |||||| || ||||||||
Sbjct 790 ATGTTCACAAAGAGCTTGGAGGCATAAAAGCAAAGCGAGAATGCTGATGGATCTTCAGAA 849
Query 836 ACTGCAGGTCAAAGCAAGTTATATTGATCTCTAAATGATGACCAACGAGAAAGGCCAAAG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 ACTGCAGGTCAAAGCAAGTTATATTGATCTCTAAATGATGACCAACGAGAAAGGCCAAAG 909
Query 896 ATTCAGAGTCTTTCTTGCATTTGGATTTGATGTCTGGTGGTTTACTCTCTTTTATTC-TT 954
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||| ||
Sbjct 910 ATTCAGAGTCTTTCTTGCATTTGGAATTGATATCTAGTGGTTTACTCTCTTTT-TTCCTT 968
Query 955 CTTATCTCTTTCCATGTAAGGCAAAGCTACTTAATCCCATGTT 997
||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 969 CTTATCTCTTTCCATGTAAGGGAAATCTACTTAGTCCCATGTT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5