BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492877

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   457    4e-128


> AT4G19980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel; EXPRESSED 
DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:10828153-10828536 
REVERSE LENGTH=384
Length=384

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 338/381 (89%), Gaps = 10/381 (3%)
 Strand=Plus/Plus

Query  6    ATTTTCCCGGCATATACGCGACGCCAAGAC-AGCCACCGCAACCGCAATGACAAAGAAGT  64
            ||||||||||||||||| || || |||| | | |||||||||||||  ||||||||||||
Sbjct  6    ATTTTCCCGGCATATACACGGCGGCAAGGCTA-CCACCGCAACCGCCGTGACAAAGAAGT  64

Query  65   CCGATGTCCCAACTAC-ATCGCCAAACTGCTGCGTCACGTGCCTTGTGAGACTCATCAGA  123
            || ||||||||||| | | |||||||||||||||||||||||||||  ||||||||||||
Sbjct  65   CCAATGTCCCAACTCCGA-CGCCAAACTGCTGCGTCACGTGCCTTGCAAGACTCATCAGA  123

Query  124  AAACTGAAGAGAAAAGGGAGGTTGTTGCTGGCTACGT---CGGCTCGGAGACAAGGAAGC  180
            |||||||||| ||||||||||||||||||||||||||   |||||||||||||||| |||
Sbjct  124  AAACTGAAGAAAAAAGGGAGGTTGTTGCTGGCTACGTCGACGGCTCGGAGACAAGGGAGC  183

Query  181  TCGTTCCAGTGCCGTTACGATCCACTGAGCTATTCACTTAACTTCGACGGAGGCGCGTGT  240
            || || || ||||| ||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct  184  TCTTTGCAATGCCGGTACGATCCAATGAGCTATTCACTCAACTTCGACGGAGGGGCGTGT  243

Query  241  GGTACACTTCCCGATGATGAGGATTATTACCTGCGGCTTTATGCGTTTTCTTCGAGATAC  300
            ||||||||||| ||||||||||| || ||| ||||| ||||||| |||||||| ||||||
Sbjct  244  GGTACACTTCCTGATGATGAGGACTACTACTTGCGGTTTTATGCTTTTTCTTCAAGATAC  303

Query  301  GTT---ACTACTAATACTATCAAGAAGAGACCACCACTTCCTCGTGAATCCTTCTCTTCC  357
            |||   |||||||| | ||||| ||||||||||||||||||||||||||||||||||  |
Sbjct  304  GTTACGACTACTAACAATATCAGGAAGAGACCACCACTTCCTCGTGAATCCTTCTCTAGC  363

Query  358  GCTTCGCATGAATTCGTGTAA  378
            ||||| ||||||||| |||||
Sbjct  364  GCTTCACATGAATTCATGTAA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5