BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492880
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19910.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 1040 0.0
> AT4G19910.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr4:10795869-10796687 REVERSE LENGTH=726
Length=726
Score = 1040 bits (563), Expect = 0.0
Identities = 674/728 (93%), Gaps = 5/728 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATACAAGCACGTCCTCTAGTGTTTATCAATCATGGTGAAAACGATCTCAGCGAC 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGCGATACAAGCACGTCCTCTAGTGTTTATCAATCATGGTGAAAGCGATCAGAGCGAC 60
Query 61 GGATTCATTAGGCATCTGGCAAGTGCCTTAAGGGACGAAGGGTTTAACGTTTTCATAGAT 120
||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 GGATTCATTAGGCATGTGGAAAGAGCCTTAAATGACGAAGGGTTTAACGTTTTCATAGAT 120
Query 121 AGTGACGAGCGAAGAGGAAGAGGCATGGAACACATTTTCAGAGCGATCGACAACTCAAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AGTGACGAGCGAAGAGGAAGAGGCATGGAACACATTTTCAGAGCGATCGATAACTCAAAT 180
Query 181 GTCGCACTAGTGATCTTCTCTGACAGGTACACAGCGTCAGAGTTGTGTTTGCACGAAGCG 240
|||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGCATTAGTGATTTTCTCTGACCGGTACACAGCGTCAGAGTTGTGTTTGCACGAAGCG 240
Query 241 GTGAGGATCTATGATCGACGTAGGGAAGGCAAACTCGTGTTGATTCCTGTCTTCTATAGG 300
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 241 GTGAGGATCTATGATCGACGTAGGGAAGGAAAACTCGTGTTGATCCCTGTCTTCTATAGG 300
Query 301 GTTTCA-ACCGACGACGTGAATATGTTCAATGGTAGATTTGGGGAGAGTTTTTTGGAAAC 359
|||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GTTTCAGAA-GACGACGTGAATATGTTCAATGGTAGATTTGGAGAGAGTTTTTTGGAAAC 359
Query 360 GTTGAAGATTCAGGGCATAAGTGATCATCCATTTGCTGAGCATTGGATGAGAAATGTGAA 419
||||| |||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 360 GTTGACGATTCAGGGCTTCAGGGATCATCCATTTGCCGAGCATTGGATGAGAAATGTGAA 419
Query 420 TTTTATCTGCACAGACACTGGTTACATCTCAGAAGATTACAGCAGCAATGATACTTCCCT 479
||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||| ||
Sbjct 420 TTTTATCTGCACAGATACTGGTTTCACCTCAGCAGATTACAGCAGCAATGATACTTCTCT 479
Query 480 TGTGGTGGAGATTGTTAGGGGTATTAAGAGACGTTTACAAGGCAAAAAACTACCGAGACG 539
||||| ||||||||| |||| ||||||||||||| |||| ||||| ||||| ||||||||
Sbjct 480 TGTGGAGGAGATTGTAAGGGCTATTAAGAGACGTCTACAGGGCAAGAAACTTCCGAGACG 539
Query 540 TGTGCAAGATGAAAATCTACCTAGCATTTTCAAA-ATGTTCATGCCAAAACAACCGAATA 598
||||||||||||||| ||||||||| ||| | | ||||||||||||||||||||||||
Sbjct 540 TGTGCAAGATGAAAAACTACCTAGCCCTTT-AGACATGTTCATGCCAAAACAACCGAATG 598
Query 599 CACAAGAAGGATTTGGAAAAGAGTTGCTTTATGTTGCTATTCCTGCTTTGCTCTGTTATT 658
| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 599 CTCAAGAGGGGTTTGGAAAAGAGTTGCTTTATGTTGCTATTGCTGCTTTGCTCTGCTATT 658
Query 659 TCATTCTCCCTTTGGTTTTCACTGATTTGGATGTCTTCAGTATCCGTCAGTTGCTCGTTG 718
||||| ||||||| |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 659 TCATTATCCCTTTTGTTTTCACAGATT-GGATGTCTTCAGTATCCTTCAGTGGCTCGTTG 717
Query 719 CTGTTCTG 726
||||||||
Sbjct 718 CTGTTCTG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5