BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492884
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19860.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2865 0.0
AT4G19850.2 | Symbols: | lectin-related | chr4:10776657-107775... 102 1e-20
> AT4G19860.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:10777512-10780461 REVERSE LENGTH=1952
Length=1952
Score = 2865 bits (1551), Expect = 0.0
Identities = 1812/1931 (94%), Gaps = 45/1931 (2%)
Strand=Plus/Plus
Query 20 TATGACAATTATTTTTCCT-CCACCTTGACTTGTACGGCTTATATTACC-AAAATTTGTT 77
|||||||||||||||| || |||||||||||||||||||||||||| || ||||||| ||
Sbjct 32 TATGACAATTATTTTT-CTGCCACCTTGACTTGTACGGCTTATATT-CCAAAAATTTCTT 89
Query 78 TTATTTTTCATCC-C---TT-TT---T-CTTCAA-TT-TCTCGCCAACCCTAATTTCCCC 126
||||| |||| || | || || | |||||| || |||| |||||||||||||||||
Sbjct 90 TTATTGTTCA-CCTCTTTTTCTTCAATCCTTCAATTTCTCTCACCAACCCTAATTTCCCC 148
Query 127 AAATTTGGT-A-AC-ATCTCTCCTTGAAATTACTTCGCAATCGATTCAATTCAACTATGT 183
||||||||| | || || | | | | || ||||||||||||||||||||||||| |||||
Sbjct 149 AAATTTGGTAATACGAT-T-T-CGTCAATTTACTTCGCAATCGATTCAATTCAATTATGT 205
Query 184 CTCTATTACTGGAAGAGATCATTCGATCAGTAGAGGCTTTGCTGAAGCTCAGAAATCGGA 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 206 CTCTATTACTGGAAGAGATCATTAGATCAGTAGAGGCTTTGCTGAAGCTCAGAAATCGGA 265
Query 244 ATCAGAAACCCTATGTTGACCCGAATCTAGACCCGGTTCTTCTAGTTCCAGGAATCGCTG 303
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 266 ATCAGGAACCCTATGTTGACCCGAATCTAAACCCGGTTCTTCTAGTTCCAGGAATCGCTG 325
Query 304 GCTCGATTCTCAACGCTGTTGATCATGAGAACGGGAATGAAGAACGTGTTTGGGTTAGGA 363
| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 326 GATCAATTCTAAACGCCGTTGATCATGAGAACGGGAACGAAGAACGTGTTTGGGTTAGGA 385
Query 364 TCTTTGGTGCTGATCACGAGTTTCGAACAAAGATGTGGTCTCGATTTGATCCTTCAACTG 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TCTTTGGTGCTGATCATGAGTTTCGAACAAAGATGTGGTCTCGATTTGATCCTTCAACTG 445
Query 424 GTAAAACGATCTCTCTTGATCCAAAAACGAGTATTGTTGTTCCTCAAGATAGAGCTGGGC 483
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 446 GTAAAACGATATCTCTTGATCCAAAAACGAGTATTGTTGTTCCTCAAGACAGAGCTGGGC 505
Query 484 TACATGCAATTGATGTCTTAGACCCAGATGTGATTGTTGGCCGCGAGTCTGTGTACTATT 543
||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 506 TACATGCAATTGATGTCTTAGACCCTGATATGATTGTTGGCCGTGAGTCTGTGTACTATT 565
Query 544 TCCATGAGATGATTGTTGAGATGATCGGATGGGGATTCGAAGAAGGGAAAACGCTTTTTG 603
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 566 TCCATGAGATGATTGTTGAGATGATCGGATGGGGATTTGAAGAAGGGAAAACCCTTTTTG 625
Query 604 GTTTTGGTTATGATTTCCGCCAAAGCAACAGACTGCAGGAAACGTTGGACCAATTTGCTA 663
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 626 GTTTTGGTTATGATTTCCGCCAAAGCAACAGACTGCAGGAAACGTTGGACCAGTTTGCTA 685
Query 664 AAAAGTTGGAAACGGTTTATAAAGCTTCAGGAGAGAAGAAGATTAATGTTATAAGTCATT 723
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 686 AAAAGTTGGAAACTGTTTATAAAGCCTCAGGAGAGAAGAAGATTAATGTTATTAGTCATT 745
Query 724 CTATGGGAGGATTGTTGGTGAAATGTTTCATGGGTCTGCATAGTGATATATTCGAGAAGT 783
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 CTATGGGAGGACTATTGGTGAAATGTTTCATGGGTCTGCATAGTGATATATTCGAGAAGT 805
Query 784 ATGTACAAAATTGGATTGCTATTGCTGCTCCATTTCGAGGTGCTCCTGGATACATCACAT 843
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 806 ATGTACAGAATTGGATTGCTATTGCTGCTCCATTTCGAGGTGCTCCTGGATATATCACAT 865
Query 844 CAACTTTACTGAATGGAATGTCGTTTGTCAATGGTTGGGAGCAGAACTTTTTCGTCTCTA 903
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 866 CGACTTTATTGAATGGAATGTCGTTTGTCAATGGTTGGGAACAGAACTTTTTCGTCTCTA 925
Query 904 AGTGGAGCATGCATCAGTTGCTTATTGAGTGTCCATCCATATATGAGCTGATGAGTTGTC 963
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 926 AGTGGAGCATGCATCAGCTGCTTATTGAGTGTCCATCCATATATGAGCTGATGTGTTGTC 985
Query 964 CGTATTTTAAATGGGAACTCCCTCCCGTCTTAGAGCTATGGAGAGAGAAAGAGAGCAATG 1023
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 986 CGTATTTTAAATGGGAGCTCCCTCCCGTCTTAGAGCTGTGGAGAGAGAAAGAGAGCAATG 1045
Query 1024 ATGGAGTTGGAACCTCTGATGTTGTTCTTGAGTCTTACCGTAGCCTGGAGAGCCTTGAAG 1083
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1046 ATGGAGTTGGAACCTCTTATGTTGTTCTTGAGTCTTACTGTAGCCTGGAGAGCCTTGAAG 1105
Query 1084 TTATTACGAAATCTCTTTCGAACAATACAGCTAATTATTGTGGAGAGTCGATCGATCTTC 1143
|| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1106 TTTTTACGAAATCTCTTTCGAATAATACAGCTGATTATTGTGGAGAGTCGATCGATCTTC 1165
Query 1144 CTTTTAACTGGAAGATCATGGAGTGGGCTCACAAAACCAAGCAAGTATTAGCCTCTGCCA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 CTTTTAACTGGAAGATCATGGAGTGGGCTCACAAAACCAAGCAAGTATTAGCCTCTGCCA 1225
Query 1204 AGCTGCCTCCTCAAGTTAAATTCTATAACATATATGGGACCAATATAGAAACCCCGCATA 1263
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1226 AGCTGCCTCCGAAAGTTAAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATA 1285
Query 1264 GTGTTTGCTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCC 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GTGTTTGCTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCC 1345
Query 1324 AGCCGACATATATATGCGTTGACGGTGATGGCACAGTCCCGATGGAATCTGCCATGGCGG 1383
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1346 AGCCGACATATATATGCGTGGATGGTGATGGCACAGTCCCGATGGAATCTGCCATGGCGG 1405
Query 1384 ATGGGCTTGAAGCAGTAGCAAGAGTTGGAGTCCCTGGTGAGCACCGAGGAATTCTCAACG 1443
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1406 ATGGGCTTGAAGCAGTAGCAAGAGTTGGAGTCCCTGGTGAGCACCGAGGAATCCTCAACG 1465
Query 1444 ATCACCGTGTCTTCCGAATGCTCAGAAAATGGCTAAATGTAGGCGAACCTGACCCATTCT 1503
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1466 ATCACCGTGTCTTCCGAATGCTCAAAAAATGGCTAAATGTAGGCGAACCAGACCCGTTCT 1525
Query 1504 ACAACCCAATAAACGATTATGTCATCCTCCCCACCACATTTGAAATGGAGAAATACCAGG 1563
|||||||| ||||||||||||||||||| |||||||||| |||| | ||||||| ||| |
Sbjct 1526 ACAACCCAGTAAACGATTATGTCATCCTTCCCACCACATATGAATTTGAGAAATTCCATG 1585
Query 1564 AGAACGGACTCGAGGTTGCTTCCGTGAAAGAATCATGGGATC-TCATATCGGACGACAAC 1622
|||| ||||||||||||||||||||||||||||| ||||| | ||||||| || ||||||
Sbjct 1586 AGAATGGACTCGAGGTTGCTTCCGTGAAAGAATCGTGGGA-CATCATATCAGATGACAAC 1644
Query 1623 AATATTGGCACAGCCGGGTCAACCGTGAGCTCCATATCAGTCTCTCAACCTGGAGATGAT 1682
||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1645 AATATCGGCACAACCGGGTCAACCGTGAACTCCATATCAGTCTCTCAACCTGGAGATGAT 1704
Query 1683 CAAAACCCTCAATCTGAAGCTCGTGCAACCTTAACCGTCCAACCACAAATCGATGGTAGA 1742
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1705 CAAAACCCTCAAGCTGAAGCTCGTGCAACCTTAACCGTCCAACCACAAAGCGATGGTAGA 1764
Query 1743 CAACATGTGGAGCTCAATGCTGTAAGTGTCTCTGTTGATGCATAAAAACGCATCTTACCT 1802
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1765 CAACATGTAGAGCTCAATGCTGTAAGTGTCTCTGTTGATGCATAAAAACGCATCTTCCCT 1824
Query 1803 TTGTAATGTGTCGTCAAGTGTGTCTTTTGTGTCTGTATATAGTGTACATAAATC--AT-C 1859
||||||||||||||||||||||||||| |||||||||||||| | ||||||| || |
Sbjct 1825 TTGTAATGTGTCGTCAAGTGTGTCTTT-GTGTCTGTATATAGCA-A-ATAAATCTCATGC 1881
Query 1860 C------A--T----CAT-A--ATAATAAATTTCGTGTTCTTATTATTGTTTAAGCTTAC 1904
| | | ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1882 CTCGTGTACATAAATCATCATCATAATAAATTTCGTGTTCTTATTATTGTTTAAGCTTAC 1941
Query 1905 AAGTTAGGATT 1915
||||| |||||
Sbjct 1942 AAGTTTGGATT 1952
> AT4G19850.2 | Symbols: | lectin-related | chr4:10776657-10777588
FORWARD LENGTH=663
Length=663
Score = 102 bits (55), Expect = 1e-20
Identities = 67/72 (93%), Gaps = 4/72 (6%)
Strand=Plus/Minus
Query 1844 GTGTACATAAATCATCCATCATAATAATAAATTTCGTGTTCTTATTATTGTTTAAGCTTA 1903
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 654 GTGTACATAAATCAT-CATC---ATAATAAATTTCGTGTTCTTATTATTGTTTAAGCTTA 599
Query 1904 CAAGTTAGGATT 1915
|||||| |||||
Sbjct 598 CAAGTTTGGATT 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94828829505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5