BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492885

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19850.2 | Symbols:  | lectin-related | chr4:10776657-107775...   534    2e-151


> AT4G19850.2 | Symbols:  | lectin-related | chr4:10776657-10777588 
FORWARD LENGTH=663
Length=663

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 373/412 (91%), Gaps = 11/412 (3%)
 Strand=Plus/Plus

Query  1    ATGAGTGTAAAGCGAAGAAAAACTGTTTCATGTTGAACGCGAGAGAACTCTCAATTACAT  60
            ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct  167  ATGAGGGTAAAGCGAAGAAAAACTGTTTCATGTTGTACGCGAGAGATCTCTCAATTACAT  226

Query  61   GGGCAGAGTCTCAGACAAATAAATATTGGAGTTGGTTCTCTGATCTTGACCAAACATCCA  120
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  227  GGGCAGAGTCTCAAACAAATAAATATTGGAGTTGGTTCTCTGATCTTGACCAAACATCAA  286

Query  121  G-G-T-T-----TTTA-GTT--TTATATGGAACGAGTAGCTTGGTTAGAAGTGGTTGGAA  169
            | | | |      | | |||    | |||||||||||||||||||||||||| || ||||
Sbjct  287  GTGATGTAAGAACTGAGGTTGCAAAGATGGAACGAGTAGCTTGGTTAGAAGTTGTCGGAA  346

Query  170  ACTTCGAAACGGAGAAACTAACTCCCAACAGTTTGTACGAGGTTGTGTTTGTGGTTAAGC  229
            | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  347  AATTCGAGACGGAGAAACTAACTCCCAACAGTTTGTACGAGGTTGTGTTTGTGGTCAAGC  406

Query  230  TAATAGATTCTGCGAAAGGATGGGATTTTCGGGTTAACTTTAAACTGGTTTTGCCAACCG  289
            |||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct  407  TAATCGATTCTGCTAAAGGATGGGATTTTCGGGTTAACTTCAAATTGGTTTTGCCAACCG  466

Query  290  GAGAAACCAGAGAGCGGCGAGAGCATGTGAATCTGTTAGAAAGGAACCAGTGGGTGGAGA  349
            ||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct  467  GAGAAACCAAAGAGCGGCGAGAGAATGTGAACCTGTTAGAAAGGAACAAGTGGGTGGAGA  526

Query  350  TTCCGGCCGGTGAGTTCAGGACATCGCCAGAACATCTTTCCGGCAAGATTGA  401
            |||||||||||||||||| || ||| ||||||||||| || |||||||||||
Sbjct  527  TTCCGGCCGGTGAGTTCATGATATCACCAGAACATCTCTCTGGCAAGATTGA  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5