BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492886
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19840.1 | Symbols: ATPP2-A1, ATPP2A-1, PP2-A1 | phloem prot... 1448 0.0
> AT4G19840.1 | Symbols: ATPP2-A1, ATPP2A-1, PP2-A1 | phloem protein
2-A1 | chr4:10774273-10775901 FORWARD LENGTH=1004
Length=1004
Score = 1448 bits (784), Expect = 0.0
Identities = 911/972 (94%), Gaps = 9/972 (1%)
Strand=Plus/Plus
Query 1 GTCAAGTTGAATATACTGATCTAA-ATAACAAATTTATCAAAAATAAGTACATCATATTG 59
|||||||||||| |||||||| || |||||||||||||||||||||| ||||||||| ||
Sbjct 1 GTCAAGTTGAATGTACTGATC-AAGATAACAAATTTATCAAAAATAAATACATCATACTG 59
Query 60 GTTTACGGGCAAGAAACATTGCTCAGAGTTATTACCAAAGAAGATGTTTGGCAACCAGGA 119
||||| | ||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||
Sbjct 60 GTTTATGAGCAAGAAACATTGCTCAGAATTATTACCAAATAAGATGTTTAGAAACCAAGA 119
Query 120 ATCGAAATACTTGATCCCGGTGCAGAAAGAAGCGTCACCGGTGACAACTTTACCGATGAA 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 CTCGAAATACTTGATCCCGGTGCAGAAAGAAGCGCCACCGGTGACAACTTTACCGATGAA 179
Query 180 AGCATCACCGGTGAAATCTCCACATAACTGTGAGGCCATTCTCAGAGACGCAGATCCTCC 239
||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AGCTTCAACGGTGAAATCTCCACACAACTGTGAGGCCATTCTCAGAGACGCAGATCCTCC 239
Query 240 GA--TCTCTGT-CTCTGTTAATCTCTCTGAACAGCTACGGTCTGGTGTTTTCTTGAAGCC 296
|| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GATCTCTCTCTCCTCTGTTAATCTCTCTGAACAGCTACGGTCTGGTGTTTTCTTGAAACC 299
Query 297 CACGAAACAGATCAAATATTGGGTGGACGAGAGAAACAGCAACTGCTTCATGCTCTTTGC 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGAAACAGATCAAATATTGGGTGGACGAGAGAAACAGCAACTGCTTCATGCTCTTTGC 359
Query 357 AAAGAACCTCTCTATCACTTGGTCTGATGACGTCAACTATTGGACTTGGTTTAACGACAA 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 360 AAAGAACCTCTCTATAACTTGGTCTGATGACGTCAACTATTGGACTTGGTTTACCGAAAA 419
Query 417 AGAGTCACCAAACGAGACTGTGGAGGCTGTGGGATTGAAAAACGTTTGTTGGCTCGACAT 476
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGTCACCAAACGAGAATGTGGAAGCTGTGGGATTGAAAAACGTTTGTTGGCTCGACAT 479
Query 477 CACGGGAAAATTTGACACGAGGAACCTCACTCCGGGGATTGCTTACGAGGTGGTCTTTAA 536
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 480 CACGGGAAAATTCGACACGAGGAACCTCACTCCGGGGATTGTTTACGAGGTAGTCTTTAA 539
Query 537 GGTGAAGCTAGAGGATCCGGCCTATGGATGGGACACGCCGGTGAACGTAAAGCTAGTATT 596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 540 GGTGAAGCTAGAGGATCCGGCCTATGGATGGGACACGCCGGTGAACCTAAAGCTAGTCTT 599
Query 597 GCCTAACGGTAAGGA-ACAACCGCAGGAGCACAAGGTGAGTTTGAGGGAACTTCCAAGGT 655
||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||||||
Sbjct 600 GCCTAACGGTAAGGAGA-AACCACAAGAGAAAAAGGTGAGTTTGAGGGAACTTCCAAGGT 658
Query 656 ATAAATGGGTCGATGTCAGAGTCGGCGAGTTCGTACCGGAGAAATCTGCTGCCGGAGAGA 715
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 659 ATAAATGGGTCGATGTCAGAGTTGGCGAGTTCGTACCTGAGAAATCCGCTGCCGGAGAGA 718
Query 716 TCACTTTCTCAATGTATGAGCATGAGGCTGGCGTTTGGAAGAAAGGGCTCTCCCTCAAAG 775
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 719 TCACTTTCTCAATGTATGAGCATGCGGCTGGTGTTTGGAAGAAAGGGCTCTCCCTCAAAG 778
Query 776 GTGTTGCAATTCGTCCCAAACAGTAATAATCAATATGGCATATAAAAACATATAAATATC 835
|||||||||||||||||||||||||||||| ||||||||| ||||||||| || | ||
Sbjct 779 GTGTTGCAATTCGTCCCAAACAGTAATAATTGTTATGGCATAGAAAAACATA-AA-TCTC 836
Query 836 CATATGCACCAATGGACCTTCTCTACATGTGTTTCACATCATGTCATGTGTGTATAATAA 895
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 837 CATATGCACCAATGGACCTTCTCAACATATATTTCACATCATGTCATGTGTGTATAATAA 896
Query 896 GGTTGATCTATCGTATTATTAGTTTAAATAACAACTTTGATGTTGGTGTTGAATAAATTT 955
||||| ||||||||||| ||||||| ||||| |||||| |||||||||||||||||| |
Sbjct 897 GGTTGTTCTATCGTATTTTTAGTTTTAATAATAACTTTAATGTTGGTGTTGAATAAACTC 956
Query 956 AAAACGAGTGTT 967
||||||||||||
Sbjct 957 AAAACGAGTGTT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5