BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492887
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19830.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1210 0.0
> AT4G19830.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr4:10772402-10774023 REVERSE LENGTH=957
Length=957
Score = 1210 bits (655), Expect = 0.0
Identities = 796/861 (92%), Gaps = 22/861 (3%)
Strand=Plus/Plus
Query 1 AAAATGATTCGGTGCTTCGCGAGGACACCACTAATAGGTGCTCCCTTCATCTCCACCGTC 60
||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||
Sbjct 88 AAAATGATTCGGTGCTTCGCGTGGACACCACTAGTAGGTGCTCCCTTAATCACCACCGTC 147
Query 61 CATTTCACATCTCCACCAACTATCAGAATTTTCGCATCTCGTTC-TCcatcatcatcatc 119
|||||||||||||| ||| || ||||||| |||||||||||||| ||| || | ||||
Sbjct 148 CATTTCACATCTCCGCCATCTCTCAGAATCTTCGCATCTCGTTCTTCC-GCA-C--CATC 203
Query 120 atcatcatcatcatcatcatcGACAGTT---GCAGCATCTAGAAGATCAATATCTCTGTC 176
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 204 ATCATCATCATCATCATCATCGACAGTTGCAGCAGCATCTAGAAGATCAATATCTCTGTC 263
Query 177 AATTATCGCCGTCACGTCTTCCGTCGTCTCTTCCGTTT-CATTCACTTCTCCGGCACTAG 235
|||||||||||||||||||||||||||||| ||| ||| | ||| | |||||||||||||
Sbjct 264 AATTATCGCCGTCACGTCTTCCGTCGTCTCCTCCTTTTGC-TTCTCGTCTCCGGCACTAG 322
Query 236 CTGAATTCTCTGAAATCCCTAATTCCGGCGGAGTTAAAGCTCTCGACCTCCGAACCGGCG 295
| || |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 323 CCGACTTCTCTGAAATCCCTAATTCCGGCGGCGTTAAAGCTCTCGACCTCCGAATCGGCG 382
Query 296 ACGGTGAAGTCCCCATTGAAGGAGATCAGATTGAAATACATTACTATGGGAGATTGGCTG 355
| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 383 ATGGTGACGTTCCCATTGAAGGAGATCAGATTGAAATACATTACTATGGGAGATTAGCTG 442
Query 356 CGAAGCAAGGATGGAGATTTGATTCAACATATGACCATAAAGATAGTAATGGTGAAGCTG 415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 443 CGAAGCAAGGATGGAGATTTGATTCAACATATGATCATAAAGATAGTAATGGTGAAGCTG 502
Query 416 TTCCTTTCACATTCGTCCTTGGTTCTAGCAAAGTAATTCCGGGGATCGAAACAGCTGTTA 475
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 503 TTCCTTTCACATTCGTCCTTGGTTCTAGCAAAGTAATTCCGGGGATTGAAACAGCTGTGA 562
Query 476 GGTCGATGAAAGTAGGCGGGATTCGTCGGGTGATTATACCTCCATCTCAAGGATACCAGA 535
|||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 563 GGTCTATGAAAGTAGGCGGGATTCGTCGGGTGGTTATACCTCCATCTCAGGGATACCAGA 622
Query 536 ATACATCACAAGAGCCTCTCCCACCAAACTTCTTTGACAGACAGAGACTCTTCACGACTA 595
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATACATCACAGGAGCCTCTCCCACCAAACTTCTTTGACAGACAGAGACTCTTCACGACTA 682
Query 596 TCTTTAACCCTACACGTCTAGCCAATGGAGAAGGTTCTACTCTTGGAACTCTCGTTTTTG 655
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TATTTAACCCAACACGTCTCGCCAATGGAGAAGGTTCTACTCTTGGAACTCTCGTTTTTG 742
Query 656 ACATCGAACTTGTCAGCACCAGAAGCCTTCACCAATAAGTCATATTGTCCTCGTACTTTT 715
|||| |||||||||||||||||| ||||||||| || |||||||||||||| ||||||||
Sbjct 743 ACATTGAACTTGTCAGCACCAGACGCCTTCACCGATGAGTCATATTGTCCTAGTACTTTT 802
Query 716 GGATAAGTGAATAGAAATTTCAACTTTAGATGTAAATGAAGTTGATCATTTGTCACTTGG 775
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 803 GGATAAGTGAATAGAAATTTCAACTTTAGATGTAAATGAAGTTGATTATTTGTCACTTC- 861
Query 776 TCTGTTGGTCCCTGTTTTCGCATTCATATTACATT-GTTGTGTAGAAAAAATAATGGTTG 834
||| ||||| ||| |||||| ||||||||| || ||||| ||| || || |||||
Sbjct 862 TCT------CCCTGCTTT-GCATTCGTATTACATTTGT-GTGTATAAATAA-AA-GGTTG 911
Query 835 ATAAATAATAGACAACGAAAC 855
||||||||||||||||||||
Sbjct 912 CTAAATAATAGACAACGAAAC 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5