BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492888
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19820.1 | Symbols: | Glycosyl hydrolase family protein wit... 1177 0.0
AT4G19750.1 | Symbols: | Glycosyl hydrolase family protein wit... 159 4e-38
AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein wit... 150 2e-35
AT4G19760.1 | Symbols: | Glycosyl hydrolase family protein wit... 135 7e-31
AT4G19720.1 | Symbols: | Glycosyl hydrolase family protein wit... 100 2e-20
> AT4G19820.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10767436-10768614 REVERSE
LENGTH=1101
Length=1101
Score = 1177 bits (637), Expect = 0.0
Identities = 788/858 (92%), Gaps = 22/858 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCCTCAAAACTCATCATCTCCATCACTTTCTTCTTATCTCTCCTCCTACGATTC 60
||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCCACAAAACTCAT--T-TCCATCACTTTCTTCTTATCTCTCCTCCTACGATTC 57
Query 61 TCCTCCGCCCAAACCGCCGTGAAAGCTACGTACTGGTTTGCGGAGAGTGAATCTCCGGTC 120
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 58 TCCTCCGCCCAAACAGTCGTGAAAGCTACCTACTGGTTTGCGGAGAGTGAATCTCCGTTG 117
Query 121 GCGGACATTGACTCATCTCTCTTCACCCACCTATTTTGCGCTTTCGCTGACATCAACCCT 180
|| | |||||||||||||||||||| ||||| |||||||||||||| || |||||| ||
Sbjct 118 GCCCAAATTGACTCATCTCTCTTCACTCACCTTTTTTGCGCTTTCGCCGATATCAACACT 177
Query 181 CTAACATATCAAGTCATTGTCTCCTCCAGGAACAAACCCAAATTCTCCACCTTTACACAA 240
||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 178 CTAACCTATCAAGTCATTGTCTCCTCCAGAAACAAACCCAAATTCTCAACATTTACACAA 237
Query 241 ACCGTCCAACGGAGAAACCCTACCGTGAGAACCCTTTTGTCTATCGGCGGTGATTTCACA 300
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 ACCGTCCGACGGAGAAACCCTACCGTGAAAACCCTTTTGTCTATCGGCGGTGATTTCACA 297
Query 301 TATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAATTGTTCATT-GC 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 298 TATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAACTGTTCATTAG- 356
Query 360 TTCTTCTATTAATCTCGCTAGATCATATGGATTCCACGGTCTCGATCTATATTGGAAGTA 419
|||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 357 TTCTTCTATTAAGCTCGCTAGATCGTGCGGATTCCACGGTCTCGATCTAAATTGGAAGTA 416
Query 420 CCCGAGCACTACGACAGAGATGGACGATTTCGGGAAGCTACTTCAAGAATGGCGATGGGC 479
||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 417 TCCGAGCATTACGACGGAGATGGACAATTTCGGGAAGCTACTTCGAGAATGGCGATTGGC 476
Query 480 GGTT-ATAGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGATGGCTGCGGTTT 538
|||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 477 GGTTGA-AGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGACGGCTGCGGTAT 535
Query 539 TCTACTCCTA---TT------CGGTACTG-CACCCGGTTCAA-GCCGTTGCCGATAGCTT 587
|||||||||| || |||| || ||||| ||| || |||||||||||||||||
Sbjct 536 TCTACTCCTACAGTTATTATTCGGT-CTTACACCCAGTT-AATGCCGTTGCCGATAGCTT 593
Query 588 GGATTGGGTTAATCTTGTTGCCTATGATTTTTACGATTCGGGTTCGTCTAGAGTAACTTG 647
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 594 AGATTGGGTTAATCTTGTTGCCTACGATTTTTATGAATCGGGTTCGTCTAGAGTAACTTG 653
Query 648 CTCACCAGCTCCTCTCTACGATCCTATAACCGCAGGTCCAAGCTGCGACGCCGGAGTGAG 707
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 654 CTCACCAGCTCCTCTCTACGATCCTATAACCACAGGTCCAAGCGGCGACGCCGGAGTGAG 713
Query 708 AGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCAT-ACTACG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 714 AGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATTA-TACG 772
Query 767 GCTACGCGTGGCGTCTCACAGACTCCAAGAATCATAACTACTACGCTAATAGCAGCGGAC 826
||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 773 GCTACGCATGGTGTCTCACAGACGCCAAGAATCATAACTACTACGCGAATAGCAGCGGAC 832
Query 827 CAGCGATATCACCTGACG 844
| ||||||||||| ||||
Sbjct 833 CGGCGATATCACCAGACG 850
Score = 303 bits (164), Expect = 2e-81
Identities = 199/216 (92%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 844 GTGGGTAACAAAGCAATGAAGGTTTATAGTTCGACGTTGGTCCAGAACTACTGTTACGCC 903
|||| ||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||
Sbjct 886 GTGGATAACAAAGCAACGATGGTTTATAATTCGAATTTGGTTCAGAATTACTGTTATGCC 945
Query 904 AAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGTTACT-AAAGTGAGATACGC 962
|||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||
Sbjct 946 AAGAAGACTTGGATTGGTTACGATGATAATCAAAGTATTGTTA-TGAAAGTGAAATACGC 1004
Query 963 TAAGCAGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATTCTCT 1022
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1005 TAAGCAAAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACGATAATTCTCG 1064
Query 1023 TCTATCTCGTGCAGGTTCGGTTTTATCCCAATTCTA 1058
|||||||||||||||||||||||||| |||||||||
Sbjct 1065 TCTATCTCGTGCAGGTTCGGTTTTATTCCAATTCTA 1100
> AT4G19750.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10745682-10747127 REVERSE
LENGTH=1089
Length=1089
Score = 159 bits (86), Expect = 4e-38
Identities = 135/158 (85%), Gaps = 5/158 (3%)
Strand=Plus/Plus
Query 891 CTACTGTTACGCCAAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGT-TACTA 949
||| ||||||| | || || |||||||||||||||||||||||||||||||| | | |
Sbjct 906 CTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTCC-A 964
Query 950 AAGTGAGATACGCTAAGC-AGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCT 1008
|||||||||||||||||| | | |||| | |||||||| ||||||||||| ||||||||
Sbjct 965 AAGTGAGATACGCTAAGCTAAA-AGGTTTGCTTGGTTACTTCTCGTGGCATGTTGGAGCT 1023
Query 1009 GACTATAATTCTCTTCTATCTCGTGCAGGTTCGGTTTT 1046
|||||||||| | ||| ||||||||||||||| ||||
Sbjct 1024 GACTATAATTGTGGTCTTTCTCGTGCAGGTTCG-TTTT 1060
> AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10763934-10765753 REVERSE
LENGTH=1357
Length=1357
Score = 150 bits (81), Expect = 2e-35
Identities = 113/129 (88%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 912 TTGGATTGGTTACGATGATAATCAGAGTATTGTTACTAAAGTGAGATACGCTAAGCAGAG 971
||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||||||
Sbjct 960 TTGGATTGGTTACGATGATAATCAGAGTATTGTGACGAAAGTTAGATATGCCAAGCAGAG 1019
Query 972 AGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATTCTCTTCTATCTCG 1031
|||| | |||||||| ||||||||||| | || |||||| |||||||| |||||||||
Sbjct 1020 AGGTTTGCTTGGTTACTTCTCGTGGCATGTCGGTGCTGACGATAATTCTGGTCTATCTCG 1079
Query 1032 TGCAGGTTC 1040
||||| |||
Sbjct 1080 TGCAGCTTC 1088
> AT4G19760.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10750381-10752028 FORWARD
LENGTH=1110
Length=1110
Score = 135 bits (73), Expect = 7e-31
Identities = 109/126 (87%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 913 TGGATTGGTTACGATGATAATCAGAGTATTGT-TACTAAAGTGAGATACGCTAAGCAGAG 971
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
Sbjct 958 TGGATTGGTTACGATGATAATCAGAGTATTGTGTAC-AAAGTGAAATACGCTAAGTTTAC 1016
Query 972 AGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATT-CTCTTCTATCTC 1030
||||| |||||||| ||||||||||| |||||||||||||||||| | | || ||||
Sbjct 1017 TGGTCTGCTTGGTTACTTCTCGTGGCATGTTGGAGCTGACTATAATTGCGGT-CTCTCTC 1075
Query 1031 GTGCAG 1036
||||||
Sbjct 1076 GTGCAG 1081
> AT4G19720.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10730363-10731750 REVERSE
LENGTH=1147
Length=1147
Score = 100 bits (54), Expect = 2e-20
Identities = 482/675 (71%), Gaps = 84/675 (12%)
Strand=Plus/Plus
Query 133 TCATCTCTCTTCACCCACCTATTT-TGCG-CTTTCGCTGACATCAACCCTCTA-A-CATA 188
||| |||||||||| || || ||| |||| |||| || ||| | |||||| | | || |
Sbjct 158 TCAACTCTCTTCACTCATCT-TTTCTGCGCCTTT-GCCGACCTTGACCCTC-AGACCA-A 213
Query 189 TCA-AGTCATTGTCTCCTCCAG-GAACAAACCCA-AATTCTCCACCTTTAC-ACAAACCG 244
|| ||| |||||||| | | || || | | ||||||||| ||| || | ||| ||
Sbjct 214 -CAGCGTCGTTGTCTCCGGC-GCTCACGAA-CAAGAATTCTCCAACTTCACTA-AAATCG 269
Query 245 TCCAACG--GAGAAACCCTAC-CGTG-AGAACCCTTTTGTCTATCGGCGG-TGATTTCAC 299
| ||| | || ||||||| | |||| | |||||| ||||| |||||||| || | |
Sbjct 270 T-CAA-GAAGAAAAACCCT-CACGTGCA-AACCCTCTTGTCCATCGGCGGAAGA-AACGC 324
Query 300 ATATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAATTGTTCATT-G 358
| |||| | |||||||||||||||||||||||||||||| ||| | |||| |||||| |
Sbjct 325 AGATAAATCCGCGTTTGCGTCTATGGCAAGTAACCCCACTTCTCGTAAATCCTTCATTTG 384
Query 359 CTTCTTCTAT-TA-ATCTCGCTAGAT-CATATGGATTCCACGGTCTCGATCTA-TATTGG 414
| || | || | | | ||||||| | ||| |||| |||| || ||||| | ||||
Sbjct 385 GT-CTGCGATCTCCAGC--GCTAGATAC-TATCGATTTGACGGACTTGATCTGGT-TTGG 439
Query 415 AAGTACCCGAGCACTACGACA-G-AGATG-GACGA-TTTCGGG-AAGCTACTTCAAGAAT 469
|||||||| | | | || | ||||| || | ||| || || |||||| || |||
Sbjct 440 AAGTACCCAAA-AG-ATGATGTGGAGATGAGAA-ACTTT-GGTCAA-CTACTTGAACAAT 494
Query 470 GGCGATGG-GCGGTTATAGCA-GAGGCTAGAA-GCAGCGGTA-AACCGCGTTTGCTTTTG 525
||||| | ||| || || | || ||| ||| ||| || | || || |||||| |||
Sbjct 495 GGCGA-GAAGCGATTG-AGGACGATGCT-GAACGCACCGAAAGAAT-GCCTTTGCTATTG 550
Query 526 ATGGCTGCGGTTTTCTACTC-CTA-TT--CGGTACTG---C--ACCCGGTTCAAGCCG-T 575
| ||||||||||| |||||| | || || | ||| | |||| ||| | | |
Sbjct 551 ACGGCTGCGGTTTACTACTCTCCGGTTTACGATTCTGTTTCCTACCCAATTCGGGA-GAT 609
Query 576 TGCCGATAGCTTGGATTGGGTTAATCTTGTTGCCTATGATTTTTACGATTCGGGTTCGTC 635
| | | |||||||||||||| ||| ||||||||||||| ||| | | ||| ||
Sbjct 610 TAAAAAAAAATTGGATTGGGTTAACCTTATTGCCTATGATTTCTAC--T-C---TTCATC 663
Query 636 TAGAGTAACTTGCTC-ACCAGCTC-CTCTCTACGATCC-T-ATAACC-GCA-GGTCCAAG 689
| | | ||| || ||| || | |||| | ||||| | | |||| | | |||||| |
Sbjct 664 CACAACCA-TTGGTCCACCCGC-CGCTCTGTTTGATCCCTCA-AACCCGAAAGGTCCATG 720
Query 690 CTGCG-ACGCCGGAGTGAGAGCGTGGACTCAAG-CTGGACTTCCGGCGAAGAAAGCAGTC 747
|| | || || ||| || ||||| | ||| | ||||||||||||||||||||||||
Sbjct 721 -TGGGGACTATGGTTTGAAAGAGTGGATT-AAGGCCGGACTTCCGGCGAAGAAAGCAGTC 778
Query 748 TTGGGATTTCCATAC 762
|||||||||||||||
Sbjct 779 TTGGGATTTCCATAC 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5