BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492890
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19750.1 | Symbols: | Glycosyl hydrolase family protein wit... 1454 0.0
AT4G19760.1 | Symbols: | Glycosyl hydrolase family protein wit... 1291 0.0
AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein wit... 363 3e-99
> AT4G19750.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10745682-10747127 REVERSE
LENGTH=1089
Length=1089
Score = 1454 bits (787), Expect = 0.0
Identities = 966/1054 (92%), Gaps = 6/1054 (1%)
Strand=Plus/Plus
Query 1 ATGACTGATCATACTGAGATTCTCCGAACC-TCTCCCATCGTAAAAGCTTCCTACTGGTT 59
||| ||||||| ||| || ||||||||||| || | ||||||||||||||||||||| |
Sbjct 1 ATGGCTGATCAAACTCAGTTTCTCCGAACCAACT-CGATCGTAAAAGCTTCCTACTGGGT 59
Query 60 TGTGAAGCCGGAAAACGACTTCCCTGCCGTAATCATTGACTCAACTCTCTTCACCCACCT 119
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||
Sbjct 60 TGTGAAGCCGGAAAACGACTTCCCTGCCGGAAACATTGACTCAACTCGCTTCACCCATCT 119
Query 120 TTTCTGCGCCTTCGCGGATC-TCGACTCTTCCACCTATGAAGTCACTATCTCCCCCGCGT 178
||||||||||||||| || | |||||||||||||| |||||||||||||||| |||||
Sbjct 120 TTTCTGCGCCTTCGCTGA-CGTCGACTCTTCCACCCATGAAGTCACTATCTCTGCCGCGA 178
Query 179 ACTTATGCGAATTCTCCAGCTTTACCAAAACCGTCCAAGAGAAAAACACCAACGTGCAAA 238
||| |||| || |||||||||||||| | ||||| |||| |||||||| |||||||||
Sbjct 179 ACTCATGCCAAGTCTCCAGCTTTACCCATACCGTTAAAGACAAAAACACGGACGTGCAAA 238
Query 239 CTCTCTTGTCGATCGGCGGTAAATG-CGCAGACACATCTGTGTTTGCGTCCATGGCAAGT 297
|||||||||||||||| |||||| | ||||||| | ||||||| |||||||||||||||
Sbjct 239 CTCTCTTGTCGATCGGGGGTAAA-GATGCAGACAAAGCTGTGTTAGCGTCCATGGCAAGT 297
Query 298 AACACCAAGAACCGGAAAGCCTTCATCGATTCTTCCATCGATATCGCTAGGAAGAAGGGT 357
|||| ||| ||||||||||| ||||| ||||| || |||||||||||||||||||||| |
Sbjct 298 AACAGCAAAAACCGGAAAGCGTTCATTGATTCCTCGATCGATATCGCTAGGAAGAAGGAT 357
Query 358 TTCTATGGCCTCGACCTAGCTTGGGAGTATCCGAGCAATGATGTGGAGATGTCCAACTTT 417
||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 358 TTCTACGGCCTCGACCTAGCTTGGGAGTATCCAAGCAATGACGTGGAGATGGCCAACTTT 417
Query 418 GGGAAACTCCTGAAAGAATGGCGAGAGGCGGTTGTGGAAGAGTCTGACAAAACTAATCAA 477
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 418 GGGAAACTCGTGAAAGAATGGCGAGCTGCGGTTGTGGAAGAGTCTGACAGAACTAATCAA 477
Query 478 CTGCCTTTGCTTTTGACGGCTGCAGTATACTACTCCCCACATTACTATGGTGAGGAGTAC 537
||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 478 CTGCCTTTGCTCTTGACGGCTGCGGTTTACTACTCCCCGGATTACTATGGTGAGGAGTAC 537
Query 538 CCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATAATGGCCTATGATTTTTAT 597
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 538 CCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATTATGGCCTACGATTTTTAT 597
Query 598 GGACCGGGTTGGTCCCCAGTGACCGGACCGCCCGCAGCGCTATATGATCCTTCCAACCCA 657
|||||||||||||| ||||||||||| || ||||| || |||| ||||||||||||||||
Sbjct 598 GGACCGGGTTGGTCGCCAGTGACCGGGCCACCCGCTGCTCTATTTGATCCTTCCAACCCA 657
Query 658 TCAGGTCGAAGTGGCGACTCCGGGTTGAGTCAGTGGCTTCAAGCTAAACTTCCGGCGAAG 717
||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 658 GCAGGTCGAAGTGGCGACTCCGGGTTGAGTAAGTGGCTTGAGGCTAAACTTCCGGCGAAG 717
Query 718 AAGGCAGTGTTAGGGTTCTCATACTCTGGTTGGGCTTGGACTCTCGAAGACGCCGAGAAT 777
|| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 718 AAAGCAGTGTTAGGATTCTCATACTGTGGTTGGGCTTGGACTCTCGAGGACGCCGAGAAT 777
Query 778 AACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCACCCGACGGTTCTATAACATAT 837
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 778 AACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCATCGGACGGTTCTATAACCTAT 837
Query 838 GAAAAGATAAGGAACTATATTGTCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTG 897
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCCAAGATAAGGAACTATATTATCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTG 897
Query 898 GTCGGATTCTATTGTTACTTCGGAACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 898 ATCGGATTCTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957
Query 958 GTGTCTAAAGTGAGATACGCTAAGCTAAAAGGCCTACTTGGTTACTTCTCGTGGCATGTT 1017
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 958 GTGTCCAAAGTGAGATACGCTAAGCTAAAAGGTTTGCTTGGTTACTTCTCGTGGCATGTT 1017
Query 1018 GGAGCTGACTATAATTGCGGTCTCTCTCGTGCAG 1051
||||||||||||||||| ||||| ||||||||||
Sbjct 1018 GGAGCTGACTATAATTGTGGTCTTTCTCGTGCAG 1051
> AT4G19760.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10750381-10752028 FORWARD
LENGTH=1110
Length=1110
Score = 1291 bits (699), Expect = 0.0
Identities = 898/994 (90%), Gaps = 14/994 (1%)
Strand=Plus/Plus
Query 94 ATTGACTCAACTCTCTTCACCCACCTTTTCTGCGCCTTCGCGGATC-TCGACTCTTCCAC 152
|||||||||||||||||||| ||||| |||||||| ||||| || | |||||||||||||
Sbjct 118 ATTGACTCAACTCTCTTCACTCACCTCTTCTGCGCTTTCGCTGA-CGTCGACTCTTCCAC 176
Query 153 CTATGAAGTCACTATCTCCCCCGCGTACTTATGCGAATTCTCCAGCTTTACCAAAACCGT 212
| |||||||||||||||| ||||| ||| || | ||||||||||||||||| |||||||
Sbjct 177 CCATGAAGTCACTATCTCTGCCGCGAACTCATACCAATTCTCCAGCTTTACCGAAACCGT 236
Query 213 CCAAGAGAAAAACACCAACGTGCAAACTCTCTTGTCGATCGGCGGTAAATG-CGCAGACA 271
||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||
Sbjct 237 TAAAGAGAAAAACACGGACGTGCAAACTCTCTTGTCGATCGGTGGTAAA-GATGCAGACA 295
Query 272 CATCTGTGTTTGCGTCCATGGCAAGTAACACCAAGAACCGGAAAGCCTTCATCGATTCTT 331
| ||||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||||| |
Sbjct 296 AAGCTGTGTTAGCGTCCATGGCAAGTAACAGCAAAAACCGGAAAGCGTTCATTGATTCCT 355
Query 332 CCATCGATATCGCTAGGAAGAAGGGTTTCTATGGCCTCGACCTAGCTTGGGAGTATCCGA 391
| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 356 CGATCGATATCGCTAGGAAGAAGGATTTCTACGGCCTCGACCTAGCTTGGGAGTATCCGA 415
Query 392 GCAATGATGTGGAGATGTCCAACTTTGGGAAACTCCTGAAAGAATGGCGAGAGGCGGTTG 451
||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 416 GCAATGACGTGGAGATGACCAACTTTGGGAAACTCCTGGAAGAATGGCGAGCGGCGGTTG 475
Query 452 TGGAAGAGTCTGACAAAACTAATCAACTGCCTTTGCTTTTGACGGCTGCAGTATACTACT 511
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 476 TGGAAGAGTCTGACAAAACTAATCAACTGCCTTTGCTCTTGACGGCTGCGGTTTACTACT 535
Query 512 CCCCACATTACTATGGTGAGGAGTACCCGGTTCAAGCCATTGCCGACAATTTGGATTTTG 571
|||| || ||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 536 CCCCGCAATACGATGGTGTGGAGTACCCGGTAAAAGCCATTGCCGACAATTTGGATTTTG 595
Query 572 TTAACATAATGGCCTATGATTTTTATGGACCGGGTTGGTCCCCAGTGACCGGACCGCCCG 631
|||||||||||||||| ||||||||||||||||||||||| || ||||| || || ||||
Sbjct 596 TTAACATAATGGCCTACGATTTTTATGGACCGGGTTGGTCGCCGGTGACGGGGCCACCCG 655
Query 632 CAGCGC--TAT-ATGATCCTTCCAACCCATCAGGTCGAAGTGGCGACTCCGGGTTGAGTC 688
| || | | | |||||||||| |||||| |||||||||| ||| |||||||||||||
Sbjct 656 CTGCCCTGTTTCATGATCCTTCTAACCCAGCAGGTCGAAGCGGCAACTCCGGGTTGAGGA 715
Query 689 AGTGGCTTCA--A-GCTAAACTTCCGGCGAAGAAGGCAGTGTTAGGGTTCTCATACTCTG 745
| |||||| | | |||||||||||| | ||||| ||||||||||||||| |||||| ||
Sbjct 716 AATGGCTTGATGAGGCTAAACTTCCGCCAAAGAAAGCAGTGTTAGGGTTCCCATACTGTG 775
Query 746 GTTGGGCTTGGACTCTCGAAGACGCCGAGAATAACGGCTATGATGCAGCCACCGATGGAG 805
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GATGGGCTTGGACTCTCGAAGACGCCGAGAATAACGGCTATGATGCAGCCACCGATGGAG 835
Query 806 CAGCGATATCACCCGACGGTTCTATAACATATGAAAAGATAAGGAACTATATTGTCGATA 865
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 836 CAGCGATATCACCCGACGGTTCTATAACCTATGCCAAGATAAGGAACTATATTGTCGATA 895
Query 866 ACGGAGCAGCCACATTCCATGATCCGGCGGTGGTCGGATTCTATTGTTACTTCGG-AACC 924
|||||||||||||||||||||||||||||||| |||| |||||||| ||| | || |||
Sbjct 896 ACGGAGCAGCCACATTCCATGATCCGGCGGTGATCGGCTTCTATTGCTACGTGGGCAAC- 954
Query 925 ACGTGGATTGGTTACGATGATAATCAGAGTATTGTGT-CTAAAGTGAGATACGCTAAGCT 983
||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
Sbjct 955 ACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTAC-AAAGTGAAATACGCTAAGTT 1013
Query 984 AAAAGGCCTACTTGGTTACTTCTCGTGGCATGTTGGAGCTGACTATAATTGCGGTCTCTC 1043
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TACTGGTCTGCTTGGTTACTTCTCGTGGCATGTTGGAGCTGACTATAATTGCGGTCTCTC 1073
Query 1044 TCGTGCAGCATCAATAGCATGGGACACTACAGAG 1077
|||||||||||||||||||||||| ||||| |||
Sbjct 1074 TCGTGCAGCATCAATAGCATGGGATACTACGGAG 1107
> AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10763934-10765753 REVERSE
LENGTH=1357
Length=1357
Score = 363 bits (196), Expect = 3e-99
Identities = 754/1013 (74%), Gaps = 79/1013 (8%)
Strand=Plus/Plus
Query 93 CATTGACTCAACTCTCTTCACCCACCTTTTCTGCGCCTTCGCGGATCTCGACTCTTC-CA 151
|||||||||| |||||||||| |||||||| || || ||||| |||||| |||| || |
Sbjct 129 CATTGACTCATCTCTCTTCACTCACCTTTTTTGTGCTTTCGCTGATCTCAACTC-TCAAA 187
Query 152 CCTATGAAGTCACTATCTCCCCCGCGTACTTATGC-GAATTCTCCAGCTTTACCA-AAAC 209
|| || |||||||| ||||| |||| || | | ||||||| | ||||| || ||||
Sbjct 188 CCAATCAAGTCACTGTCTCCTCCGCAAAC-CAACCTAAATTCTCAACCTTTA-CACAAAC 245
Query 210 CGTCCAAGAG-AAAAACACCAAC-GTGCAAACTCTCTTGTCGATCGGCGGT-AAATGCGC 266
|||||| | | |||| || | || |||| |||||||| ||||||||| ||| ||
Sbjct 246 TGTCCAA-CGCAGAAAC-CCTTCTGTTAAAACCCTCTTGTCCATCGGCGGTGGAAT-AGC 302
Query 267 AGACACATCTGTGTTTGCGTCCATGGCAAGTAACACCAAGAAC-CGGAAAGCCTTCATCG 325
||| | | | | || ||| || |||||||||||| || | | || ||| | ||||| |
Sbjct 303 AGATAAAACCGCGTATGCTTCTATGGCAAGTAAC-CCCACTTCTCGAAAATCATTCATTG 361
Query 326 ATTCTTCCATCGATA-TCGCTAGGA-AGAAGGGTTTCTATGGCCTCGACCTAG-CTTGGG 382
||||||| || | | | |||| || | || ||| | || || || |||| | ||||
Sbjct 362 ATTCTTCGAT-AAGAGTGGCTA-GATCCTATGGATTCCACGGTCTTGATCTAGAC-TGGG 418
Query 383 AGTATCCGAGCAATGATG-TGGAGATGTCCAACTTTGGGAA-ACTCCTGAAAGAATGGCG 440
|||||||||||| || | ||||||| ||||| || |||| || || |||||||||
Sbjct 419 AGTATCCGAGCAGTG-CGACGGAGATGACCAAC-TTCGGAACGCTACTTCGAGAATGGCG 476
Query 441 A-GAGGCGGTTGTGGAAG-AGTCTGA-CA-AAACTAATCAACTGCCTTTGCTTTTGACGG 496
| | |||||||| | || || || | | | | | ||| || |||||||||| |||
Sbjct 477 ATCA-GCGGTTGTAGCAGAAG-CT-AGTAGCAGC-GGTAAACCGCGTTTGCTTTTGGCGG 532
Query 497 CTGCAGTATACTACTCCCCAC-ATTACTA-T-GGTGAGGAGTACCCGG-TTCAAGCCATT 552
|||| || | ||||| || || ||||||| | ||| | |||||||| ||| |||| ||
Sbjct 533 CTGCGGTTTTCTACT-CCAACAATTACTATTCGGT-A-CTGTACCCGGTTTC-AGCCGTT 588
Query 553 GCCGA-CAATTTGGATTTTGTTAA-CATAATGGCCTATGATTTTTATGGACCGGGTTGGT 610
| | | || ||||||| ||||| | | ||||||||||||||||| |||||||||||||
Sbjct 589 G-CTAGCAGCTTGGATTGGGTTAATC-TTATGGCCTATGATTTTTACGGACCGGGTTGGT 646
Query 611 CCCCAGTGACCGGACCGCCCGCAGCGCTATATGATCCTTCCAACCCATCAGGTCGAAGTG 670
|| ||||||||| || || || || || | |||||||| ||| | |||||| ||| |
Sbjct 647 CCAGAGTGACCGGTCCACCAGCCGCTCTGTTTGATCCTT-CAA-AC-GCAGGTCCAAGCG 703
Query 671 GCGACTCCGGGTTGA-GTCAGTGGCTTCAAGCTAAACTTCCGGCGAAGAAGGCAGTGTTA 729
| ||| | || | |||| ||| |||||||| ||| || |||||||| || || ||
Sbjct 704 GAGACGCTGGAACAAGGTCA-TGGATTCAAGCTGGACTCCCAGCGAAGAAAGCTGTCTT- 761
Query 730 GGG--TTCTCATACT-CTGGTTGGGCTTGGAC-TCTCGA-AGACGCCGAGAATAACGGCT 784
||| ||| |||||| | || | || ||| | |||| | | ||||| | | | | |||
Sbjct 762 GGGATTTC-CATACTAC-GGGTACGCGTGG-CGTCTC-ACAAACGCCAACAGTCATAGCT 817
Query 785 A-TGATGCAGCC-ACCGA-TGGAGCAGCGATATCACCCGACGGTTCTATAACATATGAAA 841
| | | || ||| ||| | |||||| ||||||||||| || ||||| ||| || |
Sbjct 818 ACT-ACGC-GCCTACC-ACTGGAGCGGCGATATCACCAGATGGTTCGATAGGTTACGGTC 874
Query 842 AGATAAGGAACTATATTGTCGATAACGGAGCAGCCAC-ATTCCATGA-TCCGGCGGTGGT 899
|||||||||| | ||| || |||||||||||| | || || || | ||| | |||||
Sbjct 875 AGATAAGGAAGTTTATAGTAGATAACGGAGCAACAACGGTT-TATAACTCC-ACAGTGGT 932
Query 900 CGGA-TTCTATTGTTACT-TCGGAACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957
|||| | |||||||| | ||| || | ||||||||||||||||||||||||||||||
Sbjct 933 CGGAGAT-TATTGTTA-TGCCGGCACGAATTGGATTGGTTACGATGATAATCAGAGTATT 990
Query 958 GTGTCTAAAGTGAGATACGCTAAGCTAAA-AGGCCTACTTGGTTACTTCTCGTGGCATGT 1016
||| | ||||| ||||| || |||| | | ||| | |||||||||||||||||||||||
Sbjct 991 GTGACGAAAGTTAGATATGCCAAGC-AGAGAGGTTTGCTTGGTTACTTCTCGTGGCATGT 1049
Query 1017 TGGAGCTGACTATAATTGC-GGTCTCTCTCGTGCAGCATCAATAG-CATGGGA 1067
|| |||||| |||||| | ||||| ||||||||||| ||| || |||||||
Sbjct 1050 CGGTGCTGACGATAATT-CTGGTCTATCTCGTGCAGCTTCAC-AGGCATGGGA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5