BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492891
Length=3120
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19710.2 | Symbols: AK-HSDH II, AK-HSDH | aspartate kinase-h... 4715 0.0
> AT4G19710.2 | Symbols: AK-HSDH II, AK-HSDH | aspartate kinase-homoserine
dehydrogenase ii | chr4:10724855-10729768 FORWARD
LENGTH=3160
Length=3160
Score = 4715 bits (2553), Expect = 0.0
Identities = 2913/3086 (94%), Gaps = 28/3086 (1%)
Strand=Plus/Plus
Query 41 TTAAACCTTTTGACCAACAATATAAAAGCCGTACACCTAATTTAT-TTCGCCGTCGGGTC 99
||||||||||||| | ||| | ||||||||||| || ||| | ||||||| || |||
Sbjct 90 TTAAACCTTTTGA-C-TTAAT-TCAAAGCCGTACAACT-TTTTTTGTTCGCCGCCGCGTC 145
Query 100 GCCGGAAAATCATCACTGTATATGCGATAAACATGGCGACTCTGAAGTCGTCATTTACTG 159
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 146 GCCGGAAAATCATCACCGTATATGCGATAAACATGGCGACTCTGAAGCCGTCATTTACTG 205
Query 160 TTTCTCCGCCGAATAGTAATCCGATTAGATTTGGATGTTTTCCGCCGCAATGCTTTCTCC 219
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 206 TTTCTCCGCCGAATAGTAATCCGATTAGATTTGGAAGTTTTCCGCCGCAATGCTTTCTCC 265
Query 220 GTGTCCCGAAACCGCCTTGTGTCCGGAAACGACTTGTATTTCCCAGGTTTCGGCGGACTA 279
|||| |||||| || | ||| |||||| |||| || ||||||||| ||| |
Sbjct 266 GTGTTCCGAAA---CC----G--CGG---CGACTTATATTGCCTAGGTTTCGGAAGACGA 313
Query 280 TTGGTGGTGGTGGCGGTGGTTTGATTCGTTGTGAGCTTCCGGATTTTCATCTATCAGCTA 339
|||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 314 ---CTGGTGGTGGCGGCGGCTTGATTCGATGTGAGCTTCCAGATTTTCATCTATCAGCAA 370
Query 340 CAGCAACTACTGTTTCAGGTGTATCGACGGTG-ATTTCCGTGGATCAAGTTCAGATTCCT 398
||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 371 CAGCAACTACTGTATCAGGTGTATCGACGGTGAATTT-AGTGGATCAAGTTCAGATTCCT 429
Query 399 AAAGGTGAAATGTGGAGTGTTCATAAGTTTGGTGGGACTTGTGTGGGAAATTCTCAGAGG 458
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 430 AAAGGTGAAATGTGGAGTGTTCACAAGTTTGGTGGGACTTGTGTGGGAAACTCTCAGAGG 489
Query 459 ATTAGGAATGTAGCAGAGGTTATAATCAATGATAACTCGGAAAGGAAACTTGTGGTTGTC 518
|| || ||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 490 ATCAGAAATGTAGCAGAGGTTATAATCAATGATAATTCCGAAAGAAAACTTGTGGTTGTC 549
Query 519 TCGGCGATGTCGAAGGTGACGGATATGATGTATGACTTAATCCGCAAGGCACAATCACGA 578
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 550 TCGGCGATGTCGAAGGTTACGGACATGATGTATGACTTAATCCGCAAGGCACAATCACGA 609
Query 579 GATGATTCTTATCTGTCCGCGTTGGAAGCTGTCTTGGAAAAGCACCGGTTGACAGCTCGT 638
|||||||||||| | ||||||||||||||||||||||||||||| || || |||||||||
Sbjct 610 GATGATTCTTATTTATCCGCGTTGGAAGCTGTCTTGGAAAAGCATCGTTTAACAGCTCGT 669
Query 639 GACCTTCTCGATGGGGATGATCTCGCTAGTTTCTTGTCACATTTGCATAATGATATTAGT 698
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GACCTTCTCGATGGAGATGATCTCGCTAGTTTCTTGTCACATTTGCATAATGATATTAGT 729
Query 699 AATCTTAAAGCAATGCTTCGTGCGATATACATAGCTGGCCATGCGTCAGAGTCGTTTTCA 758
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 730 AATCTTAAAGCAATGCTTCGTGCTATATACATAGCTGGCCATGCATCAGAGTCGTTTTCA 789
Query 759 GATTTTGTTGCAGGACATGGAGAACTTTGGTCTGCTCAGATGCTATCATATGTTGTCAGA 818
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 790 GATTTTGTTGCAGGACATGGGGAGCTTTGGTCTGCTCAGATGCTATCATATGTTGTCAGA 849
Query 819 AAGACTGGCCTTGAGTGCAAGTGGATGGATACTAGAGACGTGCTCATCGTTAATCCTACC 878
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 850 AAGACTGGGCTTGAGTGCAAGTGGATGGATACTAGAGACGTGCTCATTGTTAATCCCACC 909
Query 879 AGCTCTAATCAGGTTGATCCTGATTTTGGTGAATCTGAGAAGAGACTCGATAAGTGGTTC 938
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 910 AGCTCTAATCAGGTTGATCCTGATTTTGGTGAATCTGAGAAGAGACTCGATAAATGGTTC 969
Query 939 TCCTTAAATCCGTCGAAAATTATTATTGCGACTGGGTTCATTGCTAGCACTCCGCAAAAC 998
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 970 TCCTTAAATCCGTCGAAAATTATTATTGCGACTGGGTTTATTGCTAGCACTCCGCAAAAT 1029
Query 999 ATTCCAACAACTTTGAAAAGAGATGGGAGTGATTTTTCTGCGGCTATTATGGGTGCTCTA 1058
||||||||||||||||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 1030 ATTCCAACAACTTTGAAAAGAGATGGGAGTGATTTCTCAGCAGCTATTATGGGTGCTTTA 1089
Query 1059 TTGAGGGCTCGTCAAGTAACAATCTGGACAGATGTTGATGGTGTATACAGTGCGGATCCT 1118
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTGAGAGCTCGTCAAGTAACCATTTGGACAGATGTTGATGGTGTATACAGTGCGGATCCT 1149
Query 1119 CGTAAAGTTAATGAGGCAGTAATTCTCCAGACACTTTCTTATCAGGAGGCCTGGGAAATG 1178
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1150 CGTAAAGTTAATGAGGCAGTGATACTCCAGACACTTTCTTATCAAGAGGCCTGGGAAATG 1209
Query 1179 TCTTATTTTGGAGCAAATGTTTTACATCCTCGCACCATCATTCCTGTGATGCGGTATAAT 1238
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1210 TCTTATTTTGGAGCAAATGTGTTACATCCTCGCACCATCATTCCTGTGATGCGATATAAT 1269
Query 1239 ATTCCGATTGTGATAAGAAATATTTTCAATCTCTCTGCACCGGGAACAATAATCTGTCAA 1298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 ATTCCGATTGTGATTAGAAATATTTTCAATCTCTCTGCACCGGGAACAATAATCTGTCAA 1329
Query 1299 CCTCCTGAAGATGATTATGACCTTAAACTGACAACTCCTGTCAAAGGGTTTGCAACTATT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 CCTCCTGAAGATGATTATGACCTTAAACTGACAACTCCTGTCAAAGGGTTTGCAACTATT 1389
Query 1359 GACAATTTGGCTCTCATAAATGTTGAAGGTACTGGAATGGCTGGTGTACCCGGTACTGCA 1418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GACAATTTGGCCCTCATAAATGTTGAAGGTACTGGAATGGCTGGTGTACCCGGTACTGCA 1449
Query 1419 AGTGACATTTTTGGCTGTGTAAAAGATGTTGGAGCTAATGTGATTATGATATCACAGGCT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 AGTGACATTTTTGGCTGTGTAAAAGATGTTGGAGCTAATGTGATTATGATATCACAGGCT 1509
Query 1479 AGCAGTGAGCATTCTGTGTGCTTCGCTGTGCCTGAGAAGGAAGTAAATGCCGTTTCTGAG 1538
||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 1510 AGCAGTGAGCATTCTGTGTGCTTTGCTGTGCCTGAGAAGGAAGTAAACGCAGTCTCTGAG 1569
Query 1539 GCACTACGGTCGAGATTTAGTGAAGCTTTACAAGCTGGACGTCTTTCTCAGATTGAGGTG 1598
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1570 GCATTGCGGTCGAGATTTAGTGAAGCTTTACAAGCGGGACGTCTTTCTCAGATTGAGGTG 1629
Query 1599 ATACCTAACTGTAGCATCTTAGCTGCAGTCGGTCAGAAAATGGCTAGTACACCTGGAGTT 1658
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1630 ATACCAAACTGTAGCATCTTAGCTGCAGTCGGCCAGAAAATGGCTAGTACACCTGGAGTT 1689
Query 1659 AGTTGTACACTTTTCAGTGCTTTGGCGAAGGCTAATATTAATGTCCGTGCTATATCGCAA 1718
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1690 AGTTGTACACTTTTCAGTGCTTTGGCGAAGGCTAATATTAATGTCCGAGCTATATCTCAA 1749
Query 1719 GGTTGTTCTGAGTACAATGTTACTGTCGTAATTAAACGTGAAGATAGCGTTAAGGCATTA 1778
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1750 GGTTGTTCTGAGTACAATGTTACTGTCGTTATTAAACGTGAAGATAGCGTTAAGGCGTTA 1809
Query 1779 AGAGCTGTGCACTCGAGGTTTTTCTTGTCAAGAACGACGTTAGCAATGGGAATCATAGGA 1838
|||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1810 AGAGCTGTACACTCGAGGTTTTTCTTGTCAAGAACAACATTAGCAATGGGAATCGTAGGA 1869
Query 1839 CCGGGCTTGATAGGTGCTACATTACTTGACCAGCTGAGGGACCAGGCTGCTGTTCTCAAA 1898
||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1870 CCGGGCTTGATTGGTGCAACATTACTTGACCAGCTGCGGGATCAGGCTGCTGTTCTCAAA 1929
Query 1899 CAAGAATTTAATATTGATCTGCGTGTTATGGGAATCACTGGTTCAAAGACTATGCTCTTA 1958
||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| | ||
Sbjct 1930 CAAGAATTTAACATTGATCTGCGTGTTTTGGGAATCACTGGTTCAAAGAAGATGTTATTG 1989
Query 1959 AGTGACATTGGTATTGATTTGTCGAGATGGAGAGAACTTCTAAACGAGAAGGGAACAGAG 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 AGTGACATTGGTATTGATTTGTCGAGATGGAGAGAACTTCTAAACGAGAAGGGAACAGAG 2049
Query 2019 GCCAATATGGATAAATTCACTCAACAAGTGCATGGAAATCATTTTATCCCCAACTCTGTA 2078
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 GCGGATTTGGATAAATTCACTCAACAAGTGCATGGAAATCATTTTATCCCCAACTCTGTA 2109
Query 2079 TTGGTTGATTGTACAGCAGATTCTGCTATTGCGAGCCATTACTATGATTGGTTACGAAAG 2138
||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct 2110 GTGGTTGATTGTACAGCAGACTCTGCTATTGCAAGCCGTTACTATGATTGGTTACGAAAG 2169
Query 2139 GGAATCCACGTCATTACCCCAAATAAAAAGGCTAACTCAGGTCCCCTTGATCAGTACTTG 2198
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2170 GGAATTCATGTCATTACCCCAAATAAAAAGGCTAACTCAGGTCCCCTCGATCAGTACTTG 2229
Query 2199 AAACTGAGAGATCTTCAAAGGAAATCCTACACTCATTACTTCTACGAAGCCACTGTTGGA 2258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2230 AAACTGAGAGATCTTCAAAGGAAATCCTACACTCATTACTTCTACGAAGCCACTGTTGGA 2289
Query 2259 GCTGGTCTTCCTATTATCAGCACTTTACGTGGTCTCCTGGAGACAGGAGACAAGATACTA 2318
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2290 GCTGGTCTTCCAATTATCAGCACTTTACGTGGTCTCCTTGAGACAGGAGATAAGATACTA 2349
Query 2319 CGCATAGAGGGCATTTGCAGTGGTACTTTGAGTTATCTATTCAACAACTTTGTTGGAGAT 2378
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2350 CGCATAGAGGGCATTTGCAGTGGAACTTTGAGTTATCTATTCAACAATTTTGTTGGAGAT 2409
Query 2379 CGAAGTTTCAGCGAGGTTGTCGCTGAAGCAAAGAATGCAGGTTTCACTGAGCCTGATCCA 2438
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 2410 CGAAGTTTCAGCGAGGTTGTCACTGAAGCAAAGAACGCAGGTTTCACTGAGCCTGATCCA 2469
Query 2439 AGAGACGATTTATCTGGAACTGATGTTGCAAGGAAGGTGATAATCCTTGCTCGAGAATCC 2498
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2470 AGAGATGATTTATCTGGAACTGATGTTGCAAGGAAGGTGATTATCCTCGCTCGAGAATCT 2529
Query 2499 GGACTGAAATTGGACCTCACTGATCTTCCTATTAGAAGTCTCGTACCAGAACCTCTAAAA 2558
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 2530 GGACTGAAATTGGACCTCGCTGATCTCCCCATTAGAAGTCTCGTACCAGAACCTCTAAAA 2589
Query 2559 GGATGCACTTCTGCTGAAGAATTCATGGAGAAACTCCCACAGTACGATGGAGACCTAGCA 2618
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 GGATGCACTTCTGTTGAAGAATTCATGGAGAAACTCCCACAGTACGATGGAGACCTAGCA 2649
Query 2619 AAAGAAAGGCTAGAAGCTGAGAACTCTGGGGAAGTCCTGAGATATGTTGGAGTGGTGGAC 2678
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2650 AAAGAAAGGCTAGATGCTGAAAACTCTGGGGAAGTTCTGAGATATGTTGGAGTGGTGGAC 2709
Query 2679 GCAGTTAACCAGAAGGGAACCGTTGAACTTAGAAGATACAAGAAAGAACATCCATTTGCA 2738
|| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2710 GCTGTTAACCAAAAGGGAACAGTTGAACTTCGAAGATACAAGAAAGAACATCCATTTGCG 2769
Query 2739 CAGCTCGCAGGATCAGACAACATAATAGCATTCACAACGACAAGGTACAAGGATCATCCA 2798
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2770 CAGCTCGCAGGTTCAGACAACATAATAGCCTTCACAACGACAAGGTACAAGGATCATCCA 2829
Query 2799 CTTATTGTCCGAGGACCTGGAGCTGGTGCTCAAGTCACGGCTGGTGGTATATTCAGCGAC 2858
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2830 CTTATAGTCCGAGGACCTGGAGCTGGTGCTCAAGTCACGGCCGGTGGTATATTCAGCGAC 2889
Query 2859 ATACTAAGGCTCGCATCTTATCTCGGTGCACCGTCTTAACCGGTGAAGAAAAC-CCCCGC 2917
||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 2890 ATACTAAGGCTTGCATCTTATCTCGGTGCACCGTCTTAACTGGTGAAGAAAACACCCCAC 2949
Query 2918 ATTAATTATCCGTTTTGCTATCTATCTTCCCGCTTAAAGTATCAGCTACGAATCAACAAC 2977
|||| ||||| |||||||||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 2950 ATTAGTTATCAGTTTTGCTAT-TATCTTCCCGCTTAAAGTATCAGCTTCGGATCAACTAC 3008
Query 2978 TTTTTGCTGGTCtttgtagttttt-gtggtaacatgtacaataacaactagttttgttgg 3036
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 3009 CTTTTGCTGGTCTTTGTAGTTTTTTGTGGTAACATGTACAATAGCAACTAGTTTTGTTGG 3068
Query 3037 atttgtttttgatttttt--aatagagttttatttgtttaatatttaCAAATCAAAACGA 3094
|| |||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 3069 ATATGTTTT-GATTTTTTTTAATACAGTTTCATTTGTTTAATATTTACAAATCAAAACGA 3127
Query 3095 TGTGCTATTTAATAAAAAGGAGCATT 3120
| || |||||||||||||||||||||
Sbjct 3128 TTTGATATTTAATAAAAAGGAGCATT 3153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 155166354699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5