BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492894
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19690.2 | Symbols: IRT1 | iron-regulated transporter 1 | ch... 2074 0.0
AT4G19680.2 | Symbols: IRT2 | iron regulated transporter 2 | ch... 298 1e-79
AT5G45105.2 | Symbols: ZIP8 | zinc transporter 8 precursor | ch... 106 6e-22
> AT4G19690.2 | Symbols: IRT1 | iron-regulated transporter 1 |
chr4:10707446-10709015 FORWARD LENGTH=1377
Length=1377
Score = 2074 bits (1123), Expect = 0.0
Identities = 1287/1365 (94%), Gaps = 15/1365 (1%)
Strand=Plus/Plus
Query 1 AAAGGaaaaaa-aaagaaaacaaaaaaTGGCTTCAACTTCAGCACTTCTCATGAAAACAA 59
||| ||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 17 AAAAGAAAAAAGAAA-AAAAAAAAAAATGGCTTCAAATTCAGCACTTCTCATGAAAACAA 75
Query 60 TCTTCCTCGTACTCATTTTTGTCTCTTTCGCAATCTCTCCGGCAACTTCAACGGCGCCCG 119
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 76 TCTTCCTCGTACTCATTTTTGTCTCTTTTGCAATCTCTCCAGCAACTTCAACTGCGCCGG 135
Query 120 AAGAATGCGGAAGCGAGTCAGCGAACCCATGCGTCAACAAAGCTAAAGTTTTGCCTCTCA 179
||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 136 AAGAATGTGGAAGCGAGTCAGCGAACCCGTGCGTCAACAAAGCTAAAGCTTTGCCTCTCA 195
Query 180 AAATCATAGCAATCGTCGCAATCCTCATTGCAAGCATGATTGGTGTTGGAGCTCCTCTCT 239
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AAGTCATAGCAATCTTCGTAATCCTCATTGCAAGCATGATTGGTGTTGGAGCTCCTCTCT 255
Query 240 TTAGCCGTAACGTTCCGTTCCTCCAACCAGACGGAAACATCTTCACTATTATTAAGTGTT 299
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 256 TTAGCCGTAACGTTTCGTTCCTCCAACCAGACGGAAACATCTTCACTATCATTAAGTGTT 315
Query 300 TCGCCTCCGGGTTCATCCTTGGAACCGGTTTTATGCACGTTTTGCCTGATTCTTTCGAAA 359
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 316 TCGCCTCCGGGATCATCCTTGGAACCGGTTTTATGCACGTTTTACCTGATTCTTTCGAAA 375
Query 360 TGTTGTCATCTATATGTCTTGAAGAGAACCCATGGCATAAATTTCCTTTCTCCGGATTTC 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 376 TGTTGTCATCTATATGTCTTGAAGAGAACCCGTGGCATAAATTTCCTTTCTCCGGATTTC 435
Query 420 TCGCTATGTTATCGGGTCTAATCACTCTAGCCATTGACTCCATGGCCACGAGCCTCTACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 436 TCGCTATGTTATCGGGTCTAATCACTCTAGCCATTGACTCCATGGCCACGAGCCTATACA 495
Query 480 CAAGCAAGAACGCAGTTGGAATCATGCCTCATGG--A----CATGGTCACGGCCCCGCAA 533
| ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||
Sbjct 496 CCAGCAAGAACGCAGTTGGTATCATGCCCCATGGTCATGGTCATGGTCACGGCCCCGCAA 555
Query 534 ATAATGTCACCTTACCAATAAAAGAAGATGATTCCG-CAAATGCACAACTCTTGCGATAC 592
|| |||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 556 ATGATGTTACCTTACCAATAAAAGAAGATGATTC-GTCAAATGCACAGCTCTTGCGATAC 614
Query 593 CGAGTCATTGCCATGGTGTTGGAACTTGGGATCATAGTTCACTCGGTGGTCATTGGACTA 652
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 615 CGAGTCATTGCCATGGTCTTGGAACTTGGGATCATAGTTCACTCGGTGGTCATTGGATTA 674
Query 653 TCTCTAGGAGCAACTAGTGACACTTGCACCATTAAAGGACTCATCGCAGCTCTTTGCTTC 712
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 675 TCTCTAGGAGCAACTAGTGACACTTGCACCATTAAAGGACTTATAGCAGCTCTTTGCTTC 734
Query 713 CATCAAATGTTCGAAGGAATGGGTCTTGGGGGTTGCATACTCCAGGCTGAGTATACGAAT 772
||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 735 CATCAAATGTTCGAAGGCATGGGTCTTGGCGGTTGTATCCTCCAGGCTGAGTATACAAAT 794
Query 773 ATGAAGAAGTTTGTTATGGCGTTCTTTTTTGCGGTGACAACACCATTCGGAATAGCGTTA 832
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 795 ATGAAGAAATTTGTTATGGCGTTCTTTTTCGCGGTAACAACACCATTCGGAATAGCGTTA 854
Query 833 GGGATCGCTCTATCAACTGTTTACCAAGATAATAGCCCAAAAGCTTTGATCACAGTTGGA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 855 GGGATCGCTCTATCAACTGTTTACCAAGATAATAGCCCAAAAGCTTTGATCACGGTTGGA 914
Query 893 CTTCTCAATGCATGCTCCGCTGGATTGCTTATTTACATGGCCCTTGTCGATCTTCTAGCT 952
||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 915 CTTCTAAATGCATGCTCCGCTGGATTGCTCATTTACATGGCACTCGTGGATCTTCTAGCT 974
Query 953 GCTGAATTCATGGGACCAAAGCTTCAAGGTAGCATCAAAATGCAGTTCAAGTGTTTAGTC 1012
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 975 GCGGAGTTCATGGGACCTAAGCTTCAAGGTAGCATCAAAATGCAGTTCAAGTGTTTAATC 1034
Query 1013 GCGGCTCTTCTCGGGTGCGGTGGAATGTCGATTATCGCCAAATGGGCTTAACTAATTCTC 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1035 GCGGCTCTTCTCGGGTGCGGTGGAATGTCGATTATCGCCAAATGGGCTTAACTAATACTC 1094
Query 1073 CACATATTAAGGAAATTTGAAATCATGTGGATTTCATTGTCGAACTAAAAACCGTTTTAG 1132
|| ||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1095 CAGATATTGCGGAA-TT-GAAATCATGTGGATTTCATTATCGAACTAAAA-CCGTTTTAG 1151
Query 1133 GTTTACGTCTCGATTCTCTATCGGTACTTTCATTTTCCCTTACAAAAGATTTGCGTGGAT 1192
||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||
Sbjct 1152 GTTTACGTCTCGATTCTCTATCGGTTTTTT-ATCTTCTCTTACAAAAGATTTGCGTGGAT 1210
Query 1193 CTATCACATTTTAAGGAACGTGTCTTTTGGTAGATATGTAAATGTGATAGGTCCCACGAT 1252
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1211 CTATCACATTTTAAGGAACATGTCTTTTGGTAGATATGTAAATGTGATAGGCCCCACGAT 1270
Query 1253 TCATAGttttttttt-tATCTTCCTTTATTTTGTCAAGGCAATATAGTTCATATCGTGTA 1311
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1271 TCATAGTTTTCTTTTGTATCTTCCTTTATTTTGTCAAGGCAGTATAGTTCATATCGTGTA 1330
Query 1312 ATGTTTTTGTATCTCATATATATAAATAAAACTTTTGTTGCTTTT 1356
||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct 1331 ATGTTTTTGCATCTCATATAAATAAATAAAACTTTTGCTGCTTTT 1375
> AT4G19680.2 | Symbols: IRT2 | iron regulated transporter 2 |
chr4:10703376-10704801 FORWARD LENGTH=1242
Length=1242
Score = 298 bits (161), Expect = 1e-79
Identities = 393/503 (78%), Gaps = 24/503 (5%)
Strand=Plus/Plus
Query 573 ATGCACAACTCTTGCGATACCGAGTCATTGCCATGGTGTTGGAACTTGGGATCATAGTTC 632
||| ||| || ||||| |||| ||||||||||||||| ||||| |||| || || |||
Sbjct 572 ATGGACAGCTTTTGCGCTACCAAGTCATTGCCATGGTATTGGAGGTTGGCATTTTATTTC 631
Query 633 ACTCGGTGGTCATTGGACTATCTCTAGGAGCAACTAGTGACACTTGCACCATTAAAGGAC 692
| || ||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 632 ATTCTGTGGTCATTGGACTATCTCTAGGAGCAACTAATGATTCATGTACCATTAAAGGAC 691
Query 693 TCATCGCAGCTCTTTGCTTCCATCAAATGTTCGAAGGAATGGGTCTTGGGGGTTGCATAC 752
||||| |||||||||||||||||| |||||||||| || |||||||| || ||||| |
Sbjct 692 TCATCATAGCTCTTTGCTTCCATCACTTGTTCGAAGGCATAGGTCTTGGTGGCTGCATCC 751
Query 753 TCCAGGCTGAGTATACGAATATGAAGAAGTTTGTT-ATGGCGTTCTTTTTTGCGGTGA-C 810
||||||| || | ||| ||| |||||||||| || ||||| |||||||| | | || |
Sbjct 752 TCCAGGCAGATTTTACAAATGTGAAGAAGTTC-TTGATGGCATTCTTTTTCACTG-GAAC 809
Query 811 AACACCAT-TCGGAATAGCGTTAG-GGA-TCGC-TCTATCAACTGTTTACCA-AGATAAT 865
|||||| | | || || | || ||| |||| | | || | | | || | ||||||
Sbjct 810 AACACCTTGT-GGTAT--CTTTCTTGGAATCGCAT-TGTCGAGTATCTAT-AGAGATAAC 864
Query 866 AGCCCAAAAGCTTTGATCAC-AGTTGGACT-TCTCAATGCATGCTCCGCTGGATTGCTTA 923
|| |||| || ||||| || | ||||||| | | ||||| ||||| || ||| |||| |
Sbjct 865 AGTCCAACCGCGTTGATTACGA-TTGGACTGT-TAAATGCTTGCTCGGCCGGAATGCTCA 922
Query 924 TTTACATGGCCCTTGTCGATCTTCTAGCTGCTGAATTCATGGGACCAAAGCTTCAAGGTA 983
| ||||||||||| ||||| ||||||||| | || |||||||| ||| ||| |||||||
Sbjct 923 TCTACATGGCCCTCGTCGACCTTCTAGCTACCGAGTTCATGGGGTCAATGCTCCAAGGTA 982
Query 984 GCATCAAAATGCAGTTCAAGTGTTT-AGTCG-CGGCTCTT-CTCGGGTGCGGTGGAATGT 1040
|||||||| | ||| ||||||| || | || ||||| || || || |||| | |||||
Sbjct 983 GCATCAAACTTCAGATCAAGTGCTTCA--CGGCGGCT-TTGCTTGGCTGCGCCGTAATGT 1039
Query 1041 CGATTATCGCCAAATGGGCTTAA 1063
|| | ||||| |||||||||
Sbjct 1040 CGGTCGTCGCCGTGTGGGCTTAA 1062
> AT5G45105.2 | Symbols: ZIP8 | zinc transporter 8 precursor |
chr5:18223453-18224946 REVERSE LENGTH=900
Length=900
Score = 106 bits (57), Expect = 6e-22
Identities = 77/87 (89%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 671 GACACTTGCACCATTAAAGGACTCATCGCAGCTCTTTGCTTCCATCAAATGTTCGAAGGA 730
||||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 600 GACACATGCACTATTAAAGGCCTTATTGCAGCTCTTTGCTTCCATCAAATGTTCGAAGGG 659
Query 731 ATGGGTCTTGGGGGTTGCATACTCCAG 757
|||||||| || |||||||| || |||
Sbjct 660 ATGGGTCTCGGCGGTTGCATCCTTCAG 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5