BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492896
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19680.2 | Symbols: IRT2 | iron regulated transporter 2 | ch... 1781 0.0
> AT4G19680.2 | Symbols: IRT2 | iron regulated transporter 2 |
chr4:10703376-10704801 FORWARD LENGTH=1242
Length=1242
Score = 1781 bits (964), Expect = 0.0
Identities = 1079/1135 (95%), Gaps = 5/1135 (0%)
Strand=Plus/Plus
Query 1 AATACTAATGGCTACTACCAAGCTCGTCTACATTCTCCTCATACTATTCACCTTCTCCGT 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 3 AATACTAATGGCTACTACCAAGCTCGTCTACATTCTCCTCATCCTATTCACCTTCACCGT 62
Query 61 ATCTCCAGCGATCGCAACGGCCCCGGAACATTGCGATAGCGGCTCGGAGAATCCGTGCAT 120
|||||| |||||| ||||||||||||||||||| |||||||||| || || ||||||||
Sbjct 63 ATCTCCGGCGATCTCAACGGCCCCGGAACATTGTGATAGCGGCTTTGATAACCCGTGCAT 122
Query 121 CAACAAAGCTAAGGCCTTACCACTCAAAATCGTAGCCATTGTAGCCATCCTTACGACAAG 180
||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 123 CAACAAAGCTAAGGCTTTACCACTCAAAATCGTAGCCATTGTTGCCATACTTACAACAAG 182
Query 181 CTTGATAGGCGTAACCTCTCCTCTTTTCAGCCGTTACATTTCGTTCCTCCGTCCTGATGG 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 183 CTTGATAGGCGTGACCTCTCCTCTTTTCAGCCGTTACATTTCGTTCCTCCGTCCCGATGG 242
Query 241 CAATGGTTTCATGATCGTAAAATGTTTTTCTTCTGGAATCATCCTTGGAACCGGCTTCAT 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 243 CAATGGTTTCATGATCGTCAAATGTTTTTCTTCTGGAATCATCCTTGGAACCGGTTTCAT 302
Query 301 GCACGTCTTGCCTGACTCTTTCGAGATGTTGTCATCGAAATGTCTTAGCGATGGTCCGTG 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 303 GCACGTCTTGCCTGACTCTTTCGAGATGTTGTCATCGAAATGTCTTAGTGATAATCCGTG 362
Query 361 GCATAAGTTCCCTTTTGCGGGTTTTGTTGCTATGATGTCCGGTCTAGTCACTCTAGCCAT 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 GCATAAGTTCCCTTTTGCGGGTTTTGTCGCTATGATGTCCGGTCTAGTCACTCTAGCCAT 422
Query 421 TGACTCCATTACCACCAGCCTTTATACCGGTAAGAACTCGGTCGGGCCAGTGCC---TGA 477
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 423 TGACTCCATTACCACCAGCCTTTATACCGGTAAGAACTCAGTCGGACCAGTGCCTGATGA 482
Query 478 CGAGTATAGCATTGATCAAGA-AAAGGCGATTCACATTGTAGGTCACAATCACAGCCACG 536
|||||| ||||||||||||| ||| ||||||||||| ||||| |||||||| || ||||
Sbjct 483 AGAGTATGGCATTGATCAAGAGAAA-GCGATTCACATGGTAGGCCACAATCATAGTCACG 541
Query 537 GTCATGGAGTAGTGCTATCAACTAAAGATGATGGACAGCTTTTGCGCCACCGAGTCATTG 596
||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 542 GTCATGGTGTAGTGCTAGCAACTAAAGATGATGGACAGCTTTTGCGCTACCAAGTCATTG 601
Query 597 CCATGGTATTGGAGCTTGGGATTTTATTTCATTCAGTGGTCATTGGACTATCTCTAGGAG 656
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 602 CCATGGTATTGGAGGTTGGCATTTTATTTCATTCTGTGGTCATTGGACTATCTCTAGGAG 661
Query 657 CAACTAATGATGCATGTACCATTAAAGGACTCATCATAGCCCTGTGCTTCCATCACTTGT 716
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 662 CAACTAATGATTCATGTACCATTAAAGGACTCATCATAGCTCTTTGCTTCCATCACTTGT 721
Query 717 TCGAAGGCATGGGTCTTGGTGGCTGCATCCTCCAGGCAGATTTTACAAATGTGAAGAAGT 776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCGAAGGCATAGGTCTTGGTGGCTGCATCCTCCAGGCAGATTTTACAAATGTGAAGAAGT 781
Query 777 TCTTGATGGCATTCTTTTTCGCTGGAACAACACCTTGTGGTATCTTTCTAGGAATCGTAT 836
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 782 TCTTGATGGCATTCTTTTTCACTGGAACAACACCTTGTGGTATCTTTCTTGGAATCGCAT 841
Query 837 TGTCGAGTATCTATAGAGATAACAGTCCAACCGCGTTGATTACGATTGGACTGTTAAATG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGTCGAGTATCTATAGAGATAACAGTCCAACCGCGTTGATTACGATTGGACTGTTAAATG 901
Query 897 CTTGCTCGGCCGGAATGCTCATCTACATGGCCCTCGTCGACCTTCTAGCTACCGAGTTCA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTTGCTCGGCCGGAATGCTCATCTACATGGCCCTCGTCGACCTTCTAGCTACCGAGTTCA 961
Query 957 TGGGATCAATGCTCCAAGGTAGCATCAAACTTCAGATCAAGTGCTTCATGGCGGCTTTGC 1016
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 962 TGGGGTCAATGCTCCAAGGTAGCATCAAACTTCAGATCAAGTGCTTCACGGCGGCTTTGC 1021
Query 1017 TCGGCTGCGCCGTTATGTCGGTCGTCGCCGTGTGGGCTTAAACACTATATCAACATAATT 1076
| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1022 TTGGCTGCGCCGTAATGTCGGTCGTCGCCGTGTGGGCTTAAACACTCTTTCAACATAATC 1081
Query 1077 AATAAATTATTTGATTTATTATTCAAGGCGACAAATACTTTCGCCTTTGTACATT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1082 AATAAATTATTTGATTTATTATTCAAGGCGACAAATACTTTCGCCTTTGTATATT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5