BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492902
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19645.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1583 0.0
> AT4G19645.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr4:10689846-10691550 REVERSE
LENGTH=1063
Length=1063
Score = 1583 bits (857), Expect = 0.0
Identities = 1005/1073 (94%), Gaps = 24/1073 (2%)
Strand=Plus/Plus
Query 1 AAAAACAGAGTCTTTTAGTTTCTTCTTCTTGGGTATAACGAAGATTTTTTAT-GTAT-TT 58
||||||||||||||||||| |||||||||||||||||||||||| ||||| | || | ||
Sbjct 1 AAAAACAGAGTCTTTTAGTATCTTCTTCTTGGGTATAACGAAGA-TTTTTGTGGTTTCTT 59
Query 59 CAGTAATGGTGATGATGATGAAGCTTGAGAGAAGGGATTAG--TGT-GAAG-AGTAAGTG 114
| | | | |||||||||| |||||||||||||| |||||| ||| |||| || ||| |
Sbjct 60 CTG-ATTAATGATGATGATAAAGCTTGAGAGAAGTGATTAGTCTGTAGAAGAAG-AAGAG 117
Query 115 TTAAAACCATTCACCAAAGAAGAAATTGAGAACTAGCTAGAGACAGTCATGGAGATCAAA 174
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 118 TTAAAACCATTCACCAAAGAAGAAATTGAG-A--A-CTAGAGACAGTCATGGAGATCAAA 173
Query 175 TCTTACCAAACTCAAGCAGAGGATTTTGTTGAACACTATTTACTAGCAGATCCATTTCTT 234
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 174 TCTTACCAAAATCAAGCAGAGTATTTTGTTGAACACTATTTATTAGCAGATCCATTTCTT 233
Query 235 CCATATACTTCTGTTGTTGCTGGAATCTTTCTCTGCAAATTGGTCTATGATCTTACGGAG 294
||||||||||||||| ||| |||||||| ||| ||||||||||| |||||||||||||||
Sbjct 234 CCATATACTTCTGTTCTTGTTGGAATCTGTCTTTGCAAATTGGTATATGATCTTACGGAG 293
Query 295 TTATTCAGCTCAATTCATATCAAATCATACTCAGCTCTCACAAAAATAAAGAGAATTGAA 354
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTATTCAGCTCAATTCATGTCAAATCATACTCAGCTCTCACAAAAATAAAGAGAATTGAA 353
Query 355 TGGAACAACAGGGGAATTTCTACAGTCCATGCGATCTTTATCTCATTCATGGCATTATAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGGAACAACAGGGGAATTTCTACAGTCCATGCGATCTTTATCTCATTCATGGCATTATAC 413
Query 415 TTTGTGTTCTTCTCTGATTTGTTTTCTGACCAAAGAAGCCTTGAAAGCCTTACGGTGTTT 474
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 414 TTTGCGTTCTTCTCTGATTTGTTTTCTGACCAAAGAAGCCTTGAAACCCTTACGGTGTTT 473
Query 475 CGTAGCTCGCCTCTCTCTAACTTTGGTTTAGGAGTATCAGTTGGTTACTTTCTTGCGGAT 534
|||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGTAACTCGCCTCTGTCTACCTTTGGTTTAGGAGTATCAGTTGGTTACTTTCTTGCGGAT 533
Query 535 CTTGGAATGATCTTTTGGCTATACCCTTCTTTAGGAGGATCAGAATATATATTCCATCAC 594
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 534 CTTGGAATGATCTTTTGGTTATACCCTTCTTTAGGAGGATCAGAATATATATTACATCAC 593
Query 595 TGCTTATCCGGAACAGCAGTAGCGTATTCTCTATTCTCTGGAGAGGCTCAGCTTTACACA 654
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 594 TGCTTATCTGGAACAGCAGTAGCGTATTCTTTGTTCTCTGGAGAGGCTCAGCTTTACACA 653
Query 655 TACATGGTTTTAATCTCTGAAGTGACTACACCAGAGATCAATCTTAGATGGTACCTTGAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TACATGGTTTTAATCTCTGAAGTGACTACACCAGAGATCAATCTTAGATGGTACCTTGAC 713
Query 715 ATTGCTGGTTT-AAAGCGATCTAAAGCTTATCTTATTAATGGAATTGCTATTTTCTTTGC 773
||||||||||| ||| |||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 714 ATTGCTGGTTTGAAA-CGATCTAAAGCTTATCTTGTTAATGGAGTTGCTATATTCTTTGC 772
Query 774 TTGGTTGACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTATATACATTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 773 TTGGTTGACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTACACACATTA 832
Query 834 TGATCAGGTGGTACAGATGCATACATTCGGTTATCTATTGGT-TTTCGTTGTACCGATTG 892
|||||||||| || ||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 833 TGATCAGGTGATAGAGATGCATACATTCGGTTATCTACTGGTATTT-GTTGTACCGATTT 891
Query 893 CATTGAGTGTCATGAACTTGATGTGGTTTGGTAAGATAGTGAAGGGATTGAAGAAAACTC 952
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 CATTGAGTGTCATGAACTTGATCTGGTTTGGTAAGATAGTGAAGGGATTGAAGAAAACTC 951
Query 953 TTGAGAAAACACAGTGAAGAAAGAGTTCTCtttttttttttttttCTAATGTAAATATAA 1012
||||||||| ||||||||||||||||| | ||||||||||| | |||||||||||
Sbjct 952 TTGAGAAAAGACAGTGAAGAAAGAGTTGTGTTTTTTTTTTT------A-TGTAAATATAA 1004
Query 1013 AACTCTTATGAAGAATCTTACAAGTTCATAAGCAACAAAGATATGGttttttt 1065
|||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1005 AACTCTTATGAAGAATCTTACAAGTTTATAAGCAACAAAGATATGGTTTGTTT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5