BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492906
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:1... 3066 0.0
AT5G45190.2 | Symbols: | Cyclin family protein | chr5:18277620... 830 0.0
> AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:10672765-10676735
FORWARD LENGTH=2039
Length=2039
Score = 3066 bits (1660), Expect = 0.0
Identities = 1942/2071 (94%), Gaps = 47/2071 (2%)
Strand=Plus/Plus
Query 1 GTTCTTTCCTTTCTCGCGTTTCTTCT-CTAGGGTTAGGGTTCGACGAACGCAGCTGTTCT 59
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GTTCTTTCCTTTCTCGCGTTTCTTCTCCTAGGGTTAGGGTTCGACGAACGCAGCTGTTCC 60
Query 60 ACGCGTTTAGCTTCAATTCGCCATTGAAGAAGCCATAATCTGATTCCTAAAGAGCTTACA 119
|||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 61 ACGCGTTTAGTTTCAATTCTCCATCGAAGAAGCCATAATCCGATTCCTAAAGAGCTTACA 120
Query 120 TTTGATATTCAACTATAAAGTTTTGACGCTAGAGATTAAGATCCTATTGCCAGTAGGTA- 178
|||| || |||||| ||||||||||||||||||||||| ||||| ||| | | || |
Sbjct 121 TTTGTTACTCAACTTTAAAGTTTTGACGCTAGAGATTACTATCCTCTTG-C--TGGGAAC 177
Query 179 TCATAC-T--TCAGACCGTGTGTGAAAGATACCAATGGCTGGAGTATTAGCTGCTGGGGA 235
||| || | ||||| |||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 178 TCA-ACGTGACCAGACTGTGTTTGAAAGATAGCAATGGCTGGAGTATTA---GCTGGGGA 233
Query 236 TTGTTCATTCGGTGAGAGTGGCATTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGA 295
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 TTGTTCATTCGGTGAGAGTGGTGTTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGA 293
Query 296 CGAGGTTGCCCGCTGGTATTTTGGAAGGAAAGAAATAGAAGAAAATTCACCATCAAGGTT 355
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 294 CGAGGTTGCCCGCTGGTATTTTGGAAGAAAAGAAATTGAAGAAAATTCACCTTCAAGGTT 353
Query 356 GGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCA 413
Query 416 GGACTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACAGCAATAATCTTCTG 475
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 414 GGATTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTG 473
Query 476 TCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGT 533
Query 536 CTGCATGTTCCTTGCTGGAAAAGTTGAAGAAACTCCAAGGCCGTTAAAAGATGTTATTGT 595
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 534 CTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGT 593
Query 596 TGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAA 653
Query 656 GGAAGTATATGAGCAACAAAAAGAGCTTATACTAAGTGGAGAAAAGATTGTACTTTCTAC 715
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 GGAAGTATATGAGCAACAAAAAGAGCTTATACTAAATGGAGAAAAGATTGTACTTTCTAC 713
Query 716 GCTGGGGTTTGACTTCAACGTTTATCATCCTTATAAACCTCTTGTAGAAGCGATAAAGAA 775
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 714 GCTGGGATTTGACTTCAATGTTTATCATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAA 773
Query 776 ATTCAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCT 835
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATTTAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCT 833
Query 836 GCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCT 893
Query 896 TGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTTTGGTGGCAAGA 955
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 TGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGA 953
Query 956 ATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGA 1013
Query 1016 GCAAAACCGAGTTCCTGCATCTCAAGGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATC 1075
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1014 GCAAAACCGTGTTCCTGCATCTCAAGTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATC 1073
Query 1076 AGCTCATCATGTTGGGTCTAGGCCAATATCAGCACGTCCAACTCATGAACATTCAAACTC 1135
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||
Sbjct 1074 AGCTCATCATGTTGGGTCTAGGCCA-T--CAGCACGTCTAACTCATGAACATTCAAATTC 1130
Query 1136 TGATAATCAT-GGGGGCTCTTCAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTG 1194
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGATAATC-TCGGGGGCTCGACAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTG 1189
Query 1195 GTGAGGCAGGTAGTGTCATTACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATA 1254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GTGAGGCAGGTAGTGTCATCACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATA 1249
Query 1255 GCCTGCATACTGAAAATCATCCAGCCCATAAGTCTAGATCAGGAGTTGAAGCATCTGGGG 1314
|| |||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 1250 GCATGCATACTGAAAGTCATCCAGCCCATAAGTCTAGATCGGGAGTTGAGGCACCTGGGG 1309
Query 1315 AGGAAAAAACAGCGAAAGCAGGTGCACATTT-CCTAGAAGATGATAAATCTAGAATTGTT 1373
|||| |||| || |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1310 AGGATAAAATAGAGAAAGCAGGTGCACATTTTCC-AGAAGATGATAAATCTAGAATTGTT 1368
Query 1374 GGTACGGGTGATACCCCAGTCAGCCAATCCCCAATAGACATAAAATTGTTTAGAGATAAG 1433
||||| | |||| | | |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1369 GGTACAGCTGATGTCACGGTCAGCCAATCCCCAAAAGACATAAAAATGTTTAGAGATAAG 1428
Query 1434 GTGAAGGCCAAACTAGAGGCTAAGAAGGTCCAAGGTGAAAAGACGAGGAAA-AAGGATTT 1492
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 1429 GTGAAGGCCAAACTAGAGGCGAAGAAGGTCCAAGGTGAAAAGACGAG-AAAGAAGGATTT 1487
Query 1493 GGTGGATGAGGATGATTTGATCGAAAGAGAATTGGAAGACGTGGAATTAGCTGTTGAGGA 1552
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1488 GGTGGATGAGGATGATTTGATAGAAAGAGAACTGGAAGACGTGGAATTAGCTGTTGAGGA 1547
Query 1553 TGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACACGGCGAGATTCTTGATGG 1612
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1548 TGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACATGGCGAGATTCTTGATGG 1607
Query 1613 AAACAATTTGGTGGTCAATACCGAGGAAGGTGAAATGGTAGATGATGTTTCTTCAACAGT 1672
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1608 AAACAACTTGGTGGTCAATACCGAGGAAGGTGAAATGATAGATGATGTTTCTTCAACA-- 1665
Query 1673 GCCAGTGCCTAGCCGGAAGAGAAAAATGGGAAGCCCTTGTGAAAAACAGTTAGGAGAAGG 1732
| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1666 ---A-TGCCTAGCCGGAAGAGAAAAATGGAAAGTCCTTGTGAAAAACAGTTAGGAGAAGG 1721
Query 1733 AAAGAGGCGACACAACAACAGTGAGAATGTAGAAGAAGGTCACAAGACAAACCGAGGAGG 1792
|||||| |||||| |||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 1722 AAAGAGACGACACGACAACAGTGAGAATGTGGAAGAAGGTCAGAAGACAAACCCAGGAGG 1781
Query 1793 AAGTAGTCATAGTCATGGTGACCGAGAGCCAAGAAGACACTCCCAAGAGAGGTAGATGAT 1852
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1782 AAGTAGTCATAGTTATGGTGACAGAGAGCCAAGAAGACACTCCCAAGAGAGGTAGATGAT 1841
Query 1853 AAAAACCTTCTCATGGTCTATTAGAGACATTTCCCAACCATGATGCGAAATGATGAGCC- 1911
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1842 CAAAACCTTCTCATGGTCTATTAGAGACATTTCCCAACCATGATGCGAAATGA-GT-CCA 1899
Query 1912 CGTGTAGTTACAATGTTCATTATCttttttttttttttttCTTGGCACTTGTATTCAACA 1971
| |||| |||||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 1900 C-TGTATTTACAATGTTGGTTATCTTTTCATTTTC-----CTTGGCACTTGTATTCAACA 1953
Query 1972 GTTGAGAAACTAAATCAGGCTTCCATCCATCAGAGACCTCCCATAGGCTTTAGGGTCTCT 2031
||||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct 1954 GTTGAGAAACTAAATCAGGTTTCCATCCATC-----CC----ATAGGATTTAGGGTCTCT 2004
Query 2032 ATAATTTTGATCTTTGCTT-GCATTCCCTTT 2061
|||||||||||||||| || |||||||||||
Sbjct 2005 ATAATTTTGATCTTTG-TTAGCATTCCCTTT 2034
> AT5G45190.2 | Symbols: | Cyclin family protein | chr5:18277620-18281874
REVERSE LENGTH=2150
Length=2150
Score = 830 bits (449), Expect = 0.0
Identities = 574/636 (90%), Gaps = 2/636 (0%)
Strand=Plus/Plus
Query 447 GTTACAATAGCTACAGCAATAATCTTCTGTCATCGATTCTTCATTCGCCAGTCACATGCT 506
||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 457 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 516
Query 507 AGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCTGGAAAAGTTGAAGAA 566
| ||||||||||||||| ||||| || || |||||||||||||||||||| ||||| |||
Sbjct 517 AAGAATGACAGAAGGACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 576
Query 567 ACTCCAAGGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAGAAGGAT 626
|||||| |||| || |||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 577 ACTCCACGGCCCTTGAAAGATGTTATTTTTGTCTCCTATGAGATTATAAACAAGAAGGAT 636
Query 627 CCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 686
||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCTGGTGCTTCCCAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 696
Query 687 CTAAGTGGAGAAAAGATTGTACTTTCTACGCTGGGGTTTGACTTCAACGTTTATCATCCT 746
||| |||||||| ||||| ||||| || || || |||||| |||| ||||||||||||
Sbjct 697 TTAAACGGAGAAAAAATTGTTCTTTCCACTCTAGGCTTTGACCTCAATGTTTATCATCCT 756
Query 747 TATAAACCTCTTGTAGAAGCGATAAAGAAATTCAAGGTCGCACAGAATGCTCTGGCCCAA 806
|||||||| || |||||||| ||||||||||| ||||| ||||||||||| || ||||||
Sbjct 757 TATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAA 816
Query 807 GTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTTAAGCCT 866
|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 817 GTTGCATGGAATTTTGTTAATGATGGTCTACGGACATCTCTCTGCCTGCAATTTAAGCCT 876
Query 867 CACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAATTACCA 926
|| || |||||||| || ||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 877 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 936
Query 927 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCTC-GACAACTAGAGGA 985
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 937 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACC-CAGACAACTGGAGGA 995
Query 986 TGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGAGTTCCTGCATCTCAAGGAAG 1045
|||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct 996 TGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAATCGTGTCCCTGCATCTCAAGGAAG 1055
Query 1046 CGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCA 1081
|||||||| ||||||||||||||||| ||||||||
Sbjct 1056 TGAAGTCGAGAGTAGTGTAGGTGGAGGGTCAGCTCA 1091
Score = 291 bits (157), Expect = 2e-77
Identities = 213/239 (89%), Gaps = 7/239 (3%)
Strand=Plus/Plus
Query 201 AAGATACCAATGGCTGGAGTATTAGCTGCTGGGGATTGTTCATT-CGGTGAGAGTGGCA- 258
||||||| ||||||||||||| || |||||||| ||||| || | |||||||||| |
Sbjct 181 AAGATACTAATGGCTGGAGTACTA---GCTGGGGAATGTTC-TTACAGTGAGAGTGG-AG 235
Query 259 TTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTG 318
||||||| |||| ||||||||| |||||||||| || |||||| |||||||||||||||
Sbjct 236 TTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 295
Query 319 GAAGGAAAGAAATAGAAGAAAATTCACCATCAAGGTTGGATAGTATTGACTTAAAGAAGG 378
|||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 296 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 355
Query 379 AAACATACCTCCGCAAGTCATACTGTACATTTTTGCAGGACTTAGGCATGAGATTAAAA 437
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 356 AAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158109075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5