BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492907
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19590.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1112 0.0
> AT4G19590.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr4:10671199-10672290 FORWARD LENGTH=1038
Length=1038
Score = 1112 bits (602), Expect = 0.0
Identities = 758/831 (91%), Gaps = 19/831 (2%)
Strand=Plus/Plus
Query 1 ATGGATATTGCCAAGAGGAAAGTTGCTGAGACTGATTACAACGGGGCGAAACTTTTTGCT 60
||||||||||| |||||||||||||| |||| ||||||||||||||| || |||||||||
Sbjct 1 ATGGATATTGCTAAGAGGAAAGTTGCAGAGAATGATTACAACGGGGCTAAGCTTTTTGCT 60
Query 61 AACAAGGCTCAGGATTTGTATCCGAAGCTTGATGGCTTAAGACAAGTTATGATGTTGATC 120
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 61 AACAAGGCTCAGGATTTGTATCCGAAACTTGATGGTTTAAGACAAGTGATGATGTTGATC 120
Query 121 GATGTTTATATCTCAGCAGGAAACAAAATCA-TCGGAGGGGAATCTGATTGGTATGGAAT 179
||||| ||||||||||||||||| | ||| | | ||||| ||||||||||||||||||||
Sbjct 121 GATGTGTATATCTCAGCAGGAAATACAATTAGT-GGAGGAGAATCTGATTGGTATGGAAT 179
Query 180 TCTTGGTGTTGATCCATTGGCTGATGAGGAAGTAGTCAAGAAACAATATAAGAGGCTAGC 239
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 TCTTGGTGTTGATCCTTTGGCTGATGAGGAAGTAGTGAAGAAACAGTATAAGAGGCTAGC 239
Query 240 TCTTTTGCTTCATCCTGACAAGAACAACTGTGAAGGTGCAGAGGGTGCGTTTAAACTTGT 299
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 240 TCTTTTGCTTCATCCTGACAAGAACAATTGTGAAGGCGCAGAGGGTGCGTTTAAGCTTGT 299
Query 300 TTTAGCTGCTTGGTGTTTGTTATCTGATAAGGTTAAGAGAATTGCTTATGATCAGAAAAG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GTTAGCTGCTTGGTGTTTGTTATCTGATAAGGTTAAGAGAATTGCTTATGATCAGAAGAG 359
Query 360 GAAGTTAAATGAAGTTAAACCGAAAAGGAGTCGAAAGCAGAAACAACCACCAAAGAAACC 419
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GAAGTTGAACGAAGTTAAACCGAAAAGGAGTCGAAAGCAGAAACAACCTCCAAAGAAACC 419
Query 420 ACCTAACCAGCCGAAACAGCCACCAAATCAGCAGAAACAACCGCCAAATCAGCAGAAGCA 479
||| || ||||||||||| | ||||||||||||||||||||| ||| |||||||||||||
Sbjct 420 ACCAAATCAGCCGAAACAACAACCAAATCAGCAGAAACAACCACCAGATCAGCAGAAGCA 479
Query 480 GCCACCAAATCAGCATAAACAGCCaccaaacgagcagaagcaaccaccaaaccagcccga 539
|||||||||||||| || ||||||||||||| ||||||||||||||| |||| |||| ||
Sbjct 480 GCCACCAAATCAGCCTAGACAGCCACCAAACCAGCAGAAGCAACCACAAAACGAGCC-GA 538
Query 540 a-cagccaccaaaccagcccaaacaaccaccaaacca-gccaaGTACTAATGGTAGAGCC 597
| || |||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 539 AACAACCACCAAACCAGCCTAAACAACCACCAAATCAAGC-AAGTACTAATGGTAGAGCT 597
Query 598 AGAAGCAAAAAGCCCACTGCTAAAGTTCCTA-CTTTTTGGACAATGTGCAACAAATGCTG 656
|||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||| |
Sbjct 598 AGAAGCAAAAAGCCCACTTCCAAAGTTTCTATCTTTT-GGACAATGTGCAACAAATGC-G 655
Query 657 -GACACAATACGAGTATGTTAGGGCAACTGAGA-AGGAGAAAACAGCAACTGAGAA--AA 712
||||||||| |||||||| ||||||||||||| || |||||||| |||||||||| ||
Sbjct 656 AGACACAATATGAGTATGTGAGGGCAACTGAGATAG-AGAAAACACCAACTGAGAAGGAA 714
Query 713 AGGAAACACCATCTGAGAAAGAGGAAACATGGCAAGCAACAAACAAGAACACAAATGGTG 772
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 715 A--AAACACCAACTGAGAAAGAGGAAACACCACAAGCAACAAACAAGAACACAAATGGTG 772
Query 773 CATC-T-T-CTTGTGATAGAGATTCTTCACTGACTGTTAATGTTGGTTCTA 820
| || | | |||||||||||||||||||||| | ||||||| ||| |||||
Sbjct 773 CTTCGTCTTCTTGTGATAGAGATTCTTCACTAAATGTTAATTTTGATTCTA 823
Score = 209 bits (113), Expect = 3e-53
Identities = 125/131 (95%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 820 AAAAGAGAGGTTAGAGAGTCGGAAGAAGAAGCTGGTAGAGGAATTGCAAACTCTGATTTG 879
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 904 AAAAGAGAGGTAAGGGAGTCAGAAGAAGAAGCTGGTAGAGGAATTGCAAACTCTGATTTG 963
Query 880 AAAGTAGAAGAAAGAGTTTTTAAGAAGCTGAGGACAGATAATTATGCAGAGTCAAGTAGT 939
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 964 AAAGTAGAAGAGAGAGTTTTTAAGAAGCTGAGGACAGATAACTATGCAGAGTCAAGTAGT 1023
Query 940 GGAATCAAGGT 950
| |||||||||
Sbjct 1024 GAAATCAAGGT 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5