BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492908
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19580.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 484 4e-136
AT4G19570.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 357 8e-98
> AT4G19580.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr4:10668367-10669452 FORWARD LENGTH=939
Length=939
Score = 484 bits (262), Expect = 4e-136
Identities = 316/341 (93%), Gaps = 8/341 (2%)
Strand=Plus/Plus
Query 381 TGAGTCTGAGCCTGAACCTGATTCTTCATGGAAACAGAAGAAACCACGCAAACCGAAGGA 440
||||||||| |||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 600 TGAGTCTGACCCTGAACCTGATTCTTCATGGAAACAGAAGAAACCACGAAAACAGGAGGA 659
Query 441 AGTCATTACCTTTTGGACAGTGTGCAAAAACAATAAGTGCAACACACATTGTAAATTAGG 500
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AGACATTACCTTTTGGACAGTGTGCAAAAACAATAAGTGCAATACACATTGTAAATTAGG 719
Query 501 GAAGGCTGAGGTAATTCCAGAGATGATCA-ATGGGAGGCCAGTCTACAGCTTTAGTGCTA 559
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 720 CAAGGCTGAGGTAATTCCAGAGATGA-AATATGGGAGGCCAGTCTACAGCTTTAATGCTA 778
Query 560 AATTTCAACCAACAAGCAAAAGCACAAGTGATGCTTCTTCTTCT---ACAACTTCAGCTT 616
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 779 AATTTCAACCAACAAGCAAAAGCACAAGTGATGCTTCTTCTTCTTCTACAACTTCAACAT 838
Query 617 CTGATAGCGCAAATCAAGAACAAGATAGAGAGTC---ACAAGAAGAGATTGTTCCTGCTA 673
|||||| ||||||| ||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 839 CTGATACCGCAAATGAAGCACAAGATAGAGAGTCGTCACAAGAAGAGTTTGTTCCTGCTA 898
Query 674 ATGCTTCACCTGCTGCTAGAGGAAATGCAAACGAAGCGTAG 714
||||||||||||||||||||||| ||||||||||||| |||
Sbjct 899 ATGCTTCACCTGCTGCTAGAGGAGATGCAAACGAAGCATAG 939
Score = 483 bits (261), Expect = 1e-135
Identities = 303/324 (94%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 1 ATGGATATTGCCGAGAAGAAACTTTCGGAGAATGATTACGATGGAGCTAAAAAATTCATT 60
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 34 ATGGATATTGCCGAGAAGAAACTTTCGAAGAATGATTACGATGGAGCTAAAACATTCATC 93
Query 61 AGCAAGGCTCAGGCTTTGTATCCAAAGCTTGATGGTTTGGAACAAGTGTTGATGATGATT 120
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 94 AGCAAGGCTCAGGCTTTGTATCCAAAGCTCGATGGTTTGGAACAAGTGGTGATGATGATC 153
Query 121 GATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTATGGAATTCTC 180
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 154 GATGTTTATATCTCTGCATCAAACAAAATCAACGGAGAAGCTGATTGGTATGGGATTCTC 213
Query 181 GGTGTAGATCCTTTAGCTGATGATGAAGCTGTGAAGAAACAGTACAAGAAGTTAGCTCTT 240
||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 214 GGTATAGATCCTTTAGCTGATGAGGAAGCAGTGAAGAAACAATACAAGAAGTTGGCTCTT 273
Query 241 TTGCTCCATCCCGACAAGAACAGGTTTAACGGCGCGGAAGGCGCGTTTAAGCTTGTTCTA 300
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 274 TTGCTTCATCCAGACAAGAACAGGTTTAATGGCGCGGAAGGCGCGTTTAAGCTTGTGCGA 333
Query 301 CAAGCTTGGGATTTATTATCTGAC 324
|| ||| |||||||||||||||||
Sbjct 334 CACGCTAGGGATTTATTATCTGAC 357
> AT4G19570.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr4:10665294-10667318 FORWARD LENGTH=1892
Length=1892
Score = 357 bits (193), Expect = 8e-98
Identities = 285/328 (87%), Gaps = 12/328 (4%)
Strand=Plus/Plus
Query 2 TGGATATTGCCGAGAAGAAACTTTCGGAGAATGATTACGATGGAGCTAAAA-A-ATTCAT 59
|||||||||| ||||||||||| || ||||||||||| | |||| |||| | || | |
Sbjct 124 TGGATATTGCTGAGAAGAAACTATCAAAGAATGATTACAACAGAGCGAAAAGATATGC-T 182
Query 60 TAGCAAGGCTCAGGC-TTTGTATCCAAAGCTTGATGGTTTGGAACAAGTGTTGATGATGA 118
|| |||||||| | | |||||||||| || | ||||||||||||||||||||| ||||
Sbjct 183 AAG-AAGGCTCA-TCGTATGTATCCAAATCTCGTTGGTTTGGAACAAGTGTTGATAATGA 240
Query 119 TTGATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTATGGAATTC 178
| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 TCGATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTACAGAGTTC 300
Query 179 TCGGTGTAGATCCTTTAGCTGATGATGAAGCTGTGAAGAAACAGT-ACAAGAAGTTAGCT 237
||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 301 TCGGTGTTGATCCTTTAGCTGATGATGAAGCTGTGAAGAAAC-GTTACAGGAAGTTAGCT 359
Query 238 CTTTTGCTCCATCCCGACAAGAACAGGTTTAAC-GGCGCGGAAGGCGCGTTTAAGCTTG- 295
|||||||| ||||| ||||| |||||||||| | || || ||||| ||||||||| |||
Sbjct 360 CTTTTGCTTCATCCTGACAAAAACAGGTTTA-CTGGTGCTGAAGGTGCGTTTAAG-TTGA 417
Query 296 TTCTACAAGCTTGGGATTTATTATCTGA 323
||||| ||||||||||| |||| |||||
Sbjct 418 TTCTAGAAGCTTGGGATCTATTGTCTGA 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5