BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492909
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19560.1 | Symbols: CYCT1;2 | Cyclin family protein | chr4:1... 2327 0.0
> AT4G19560.1 | Symbols: CYCT1;2 | Cyclin family protein | chr4:10661428-10664716
FORWARD LENGTH=1864
Length=1864
Score = 2327 bits (1260), Expect = 0.0
Identities = 1658/1842 (90%), Gaps = 60/1842 (3%)
Strand=Plus/Plus
Query 1 TTCGTTCACGCGTTTCTTTTTCTCGTTGAGTGCAACTGTTCTAGAATTTGTGTAACAGTC 60
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 44 TTCGTTTACGCGTTTCTTTTTCTCGTTGAGTGCATTTGTTCTAGAATTTGTGTATTAGTC 103
Query 61 T---AAGAT--TTACAT-ACCA-AT-GGAAGAA-GCA-GAAGCATTGCCTGGGAATGCTT 110
| ||||| |||| | | || | || | | ||||||||| || ||||||||
Sbjct 104 TAAGAAGATCATTAC-TGTTTACATACCACCAATGGATGAAGCATTGAATGAGAATGCTT 162
Query 111 CTGGCAATGAGAGCGATGTTTCGTCAGTCACTAGCAATCTCCATGATGATGAGATTATCC 170
|||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 163 CTGGCAGTGAGAGCGATGCTTCGTCAGTCGCGAGCAATCTCCATGATGATGAGATTATCC 222
Query 171 CTTGGtttttttCAAGAGAAGATATCGaaaaaaaCTCACCGTCAAGGCGAGATGGTATTG 230
||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 223 CTTGGTTCTTTTCAAGAGAAGAGATCGAAAGAAACTCACCGTCAAGGCGAGATGGTATTG 282
Query 231 ATTTGAACAAAGAAACTCGCCTACGCCACTCTTACTGTATATTTTTGGAAAAT-CTCGGT 289
||||||| | ||||||||||||||| |||| ||||||| |||||||| |||| |||||
Sbjct 283 ATTTGAAGACTGAAACTCGCCTACGCGACTCATACTGTACATTTTTGG-AAATACTCGGC 341
Query 290 AAAAGATTGAAAGTTCCTCAGGTAACGATAGCCACTGCTATAGTATTCTGTCACCGATTC 349
|||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||
Sbjct 342 GAAAGATTGAAAGTTCCCCAGGTAACAATAGCCACTGCTATATTTTTCTGTCACCGATTC 401
Query 350 TTCGTTCGTCAATCACACGCGAAGAATGACAGTCGGACGATTGCAACAGTCTGCATGCTC 409
||| ||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||
Sbjct 402 TTCCTTCGTCAATCACATGCGAAAAATGACAGACAGACGATTGCAACAGTCTGCATGCTC 461
Query 410 TTAGCTGGGAAGGTTGAGGAAACTCCAGTGCCATTAAAAGACGTTATTATTGCCTCTTAT 469
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 462 CTAGCTGGGAAGGTTGAGGAAACTCCAGTGACATTAGAAGACGTTATTATTGCCTCATAT 521
Query 470 GAGAGAATGCACAAGAACGATCTTGCTGGCGCTCAGAGAAAGGAAGTATATGAGCAACAG 529
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 522 GAGAGAATACACAAGAAGGATCTTGCTGGTGCTCAGAGAAAGGAAGTATATGACCAACAG 581
Query 530 AAAGAGCTTGTATTAATCGCAGAGGAGCTTGTTCTTTCTACATTGAACTTTGATCTCTTT 589
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 582 AAAGAGCTTGTATTAATCGGAGAGGAGCTTGTTCTTTCTACATTGAACTTTGATCTCTGT 641
Query 590 ATTCA-CCACCCTTATAAACCTCTTGTAAAAGCAATTAAGAAATATATGGTTGAAGATGC 648
||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 642 ATT-AGCCACCCTTATAAACCTCTTGTAGAAGCAATTAAGAAATATATGGTTGAAGATGC 700
Query 649 TAAGACCCGACTTGCCCAATTTGCATGGAATTTTGTCAACGATTGTCTGCGAACGACACT 708
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TAAGACCCAACTTGCCCAATTTGCATGGAATTTTGTCAACGATTGTCTGCGAACGACACT 760
Query 709 CTGCCTGCAGTATAAGCCTCATCACATAGCGGCAGGTGCTATTCTCCTTGCTGCTGAGCT 768
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CTGCCTGCAGTATCAGCCTCATCACATAGCGGCAGGTGCTATTCTCCTTGCTGCTGAGCT 820
Query 769 GCTAACAGTGGACATACAATCATACGGAGAGGTCTTGTGTCAAGAGTTTGATATCAAACC 828
|| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 821 GCCAACAGTGGACTTACAATCTTACAGAGAGGTCTTGTGTCAAGAGTTTGATATCACACC 880
Query 829 CTGTCAGTTAAAAGATATCCGAGGCCAAATACTTGAGCTTTATGAGAGAAAGAATATTCC 888
||||| ||| ||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 881 TTGTCAATTAGAAGATATCCGAGGCCAAATACTTGAGCTTTATGAGAGAA----T-T-CC 934
Query 889 TACATCTCAAGAAAGCATAGTTGAAAGTAGTGGTAATGTAGCCGTAGTGCATCAACCTAT 948
||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 935 TACATCTCAAGAAAGCAAAGTTGAAAGTAGTGGTGGTGTGGCCGTAGTGCATCAACCTAT 994
Query 949 ATCCAGAGATATGGCTTCCACAGAGAAGTGTTCAAGTTCTGATATTGAAGAAGGCTCATC 1008
||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 995 ATCTAGAGATATGGCTTCCACAGAGAAGTGTCCAAGTTCTGATATTGAAGGAGGCTCATC 1054
Query 1009 GCAAGTCAATCTAAGCCAGAGCGATGATCATTCAGTCCACGATGGGTCTAGGCCTGAAGG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1055 GCAAGTCAATCTAAGCCAGAGCGATGATCATTCAGTCCACGATGGGTCTAGGTCTGAAGG 1114
Query 1069 AATTGGAGAGGAGAACTCAGAAAGTGAAGCTGAAAAGAATCGAGATGACCATTCTGTTGG 1128
||||||||||| ||||||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct 1115 AATTGGAGAGGTGAACTCAGAAAGTGAAGCTCAAAAGAATCTACAGGACCATTCTGTTGG 1174
Query 1129 TACTATAATGGTTGAGACAAGTGATGGTGTTGGGGTCATCCAATTGGAGAAAGACTTGCA 1188
|| |||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||
Sbjct 1175 TAATATAATGGTTGAGAAAAGTGATGATGTTGGGGTCGTCCAATTGAAGAAAGACTTGCA 1234
Query 1189 ACTGCATCAAAAGGAAGTGGAGGCTAAACAAGAGAAAGATAAGAAGTCATCTGACAAAA- 1247
|||||||||| |||| || ||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 1235 ACTGCATCAAGAGGAGGTTGAGTCTAAACAAGAGAAAGATAAGAAGTCATTTGA-AAAAG 1293
Query 1248 ATATAAAGAAAATGGAGTTGATGGATGAGAAGGATTTGACTGAAAGAGAAGCAGAAGATG 1307
|||||| |||||| || ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1294 ATATAACGAAAATAGATTTGATGGATGAGAAGGATTTGACTGAAAGTGAAGTAGAAGATG 1353
Query 1308 AGGAT-AACAAAACAATGCAGACGAG-AAGACAAAGCTTTATGAAAGTCAAGGACCCTGG 1365
|| || ||||||||||||||||| || |||||||| |||||||||||| |||||||||
Sbjct 1354 AG-ATTAACAAAACAATGCAGAC-AGGAAGACAAATCTTTATGAAAGTTGAGGACCCTGA 1411
Query 1366 TGAGAACACGAGTGTTGAACACAGTGAGATTCTAGATGCAAACCACTCAGGTGATGATGG 1425
||| |||| || ||| |||||||||||||||| | |||||||| ||||||||| |||||
Sbjct 1412 TGACAACATGACTGTCGAACACAGTGAGATTCGAAATGCAAACAACTCAGGTGTTGATGA 1471
Query 1426 TGAATTGGTAGCTGATACTTGTCTGATAGATGACAAAGATTTGAAGGAAATGGTCGTTGA 1485
||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 1472 TGAATTGGTGGCTGATACTTGTCTGATAAATGACAGTGATTTGTAGGAAATGGTCGTTGA 1531
Query 1486 AGATGGTGAAATACTGGTTTAGATTTTTAGCTGAGGAGCTTTGGAAGAGAACCGGTTTTT 1545
||||||||||||| |||||||||| ||||||| || |||||| |||||||||| |||||
Sbjct 1532 AGATGGTGAAATAGTGGTTTAGATGTTTAGCTCAGAAGCTTTCGAAGAGAACCAGTTTT- 1590
Query 1546 TGGTGCTGAGAAGAGCTTTTTAACTAGGTGGTGAGTTTTGGAGAGACAACTATTATATGT 1605
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1591 -GGTCCTGAGAAGAGCTTTTTAACTAGGTG---AGTTTTGGAGAGACAACTATTATATGT 1646
Query 1606 TTT--------G--G----TTTAGTTTCAAGATTTTTGGTAGATTATGACTTAT-AATTC 1650
||| | | |||||||||||||||| |||||||| ||||||| | ||| |
Sbjct 1647 TTTCTCCAAAAGACGAAGGTTTAGTTTCAAGATTTGTGGTAGATCATGACTT-TGAAT-C 1704
Query 1651 TTTTTTCATCTCT-AAGACTTT-AACTACACTGGAACAAAAGCAAGTTCTCCTTGCATCG 1708
|||| ||| |||| |||||||| ||||||| |||||| | ||||||||||||||||||||
Sbjct 1705 TTTTCTCA-CTCTTAAGACTTTTAACTACAGTGGAACGAGAGCAAGTTCTCCTTGCATCG 1763
Query 1709 TCAATGTGT-----AATGTCCTAAC-TTCTCTTAAACATTGTGGTGTAGTTTCAAGATTT 1762
||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1764 TCAATGTGTTGTGTAATGTCCTAAAGTTCTCTTAAACATTGTGGTATAGTTTCAAGATTT 1823
Query 1763 GTGGGAGATCCTTTTC-TGTCAAGAAAATTGGGTTTCATGAC 1803
|||| ||||||||||| | ||||| |||||||||||||||||
Sbjct 1824 GTGGTAGATCCTTTTCAT-TCAAGTAAATTGGGTTTCATGAC 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89206368465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5