BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492911
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19540.1 | Symbols: INDL | IND1(iron-sulfur protein required... 1755 0.0
> AT4G19540.1 | Symbols: INDL | IND1(iron-sulfur protein required
for NADH dehydrogenase)-like | chr4:10657383-10659233 FORWARD
LENGTH=1215
Length=1215
Score = 1755 bits (950), Expect = 0.0
Identities = 1046/1092 (96%), Gaps = 8/1092 (1%)
Strand=Plus/Plus
Query 1 TCTCTCCCTATGGCCACCGTCGCGCTTCTTCGGTCTCTCCGCCGCCGTGAACTACACGCA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 126 TCTCTCCCTATGGCCACCGTCGCGCTTCTTAGGTCTCTCCGCCGCCGTGAACTCCACGCA 185
Query 61 GCTCCCATCTCTGCATACAAATTCAGTTCTGCTAGCGCCGGCGGGAGGACGACGGAGCTC 120
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GCTCACATCTCTGCATATAAATTCAGTTCTGCTAGCGCCGGCGGGAGGACGACGGAGCTC 245
Query 121 CGGTTACATGGAGTCAAGGACATCATCGCCGTTGCGTCTGGTAAAGGCGGAGTTGGAAAG 180
|| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 246 CGACTACACGGAGTCAAAGATATCATCGCCGTTGCGTCTGGTAAAGGCGGAGTTGGAAAG 305
Query 181 TCTTCGACAGCTGTAAACTTAGCTGTTGCATTGGCC-ACTAAATGTGAACTGAAGATTGG 239
||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 306 TCTTCAACAGCTGTAAACTTAGCTGTTGCATTGGCCAAC-AAATGTGAGCTGAAGATTGG 364
Query 240 ATTGCTTGATGCGGATGTATATGGACCATCTGTTCCTATCATGATGAATATCAATCAAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ATTGCTTGATGCGGATGTATATGGACCATCTGTTCCTATCATGATGAATATCAATCAAAA 424
Query 300 GCCTCTAGTTAACCAAGATATGAAGATGATTCCAGTTGACAACTATGGAGTTAAATGCAT 359
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 425 GCCTCAAGTTAACCAAGATATGAAGATGATTCCAGTTGAGAACTATGGAGTTAAATGCAT 484
Query 360 GTCAATCGGACTCCTTGTTGAAAAAGATGCACCACTTGTCTGGAGAGGTCCTATGGTAAT 419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GTCAATGGGACTTCTTGTTGAAAAAGATGCACCACTTGTCTGGAGAGGTCCTATGGTAAT 544
Query 420 GAGTGCTCTAGCTAAGATGACAAGAGGAGTTGATTGGGGAGATCTTGATATTCTTGTTGT 479
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 545 GAGTGCTCTTGCTAAGATGACAAAAGGAGTTGATTGGGGAGATCTTGATATTCTCGTTGT 604
Query 480 TGATATGCCTCCTGGAACGGGTGATGCTCAAATCACCATATCCCAAAACCTGAAACTCTC 539
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 605 TGATATGCCACCTGGAACCGGTGATGCTCAAATCTCCATATCCCAAAACCTGAAACTCTC 664
Query 540 AGGTGCTGTAATTGTATCAACTCCACAAGATGTTGCGCTTGCTGATGCTAATCGAGGAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 665 GGGTGCTGTAATTGTATCAACTCCACAAGATGTTGCGCTTGCTGATGCTAATAGAGGAAT 724
Query 600 CTCCATGTTTGACAAAGTTAGAGTACCTATCTTGGGACTTGTGGAGAACATGAGTTGCTT 659
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 725 CTCCATGTTCGACAAAGTTAGAGTACCTATTTTGGGACTTGTAGAGAACATGAGTTGCTT 784
Query 660 CGTTTGTCCTCACTGTAATGAACCTTCTTTCATATTTGGGAAAGAAGGAGCACGCCGCAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CGTTTGTCCTCACTGTAATGAACCTTCTTTCATATTTGGGAAAGAAGGAGCACGCCGCAC 844
Query 720 TGCTGAAAAGAAGGGTCTGAAACTTATCGGTGAGATTCCACTGGAAATGTCGATCAGAGA 779
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 845 TGCTGCAAAGAAGGGTTTGAAACTTATCGGTGAGATTCCACTGGAAATGTCGATAAGAGA 904
Query 780 AGGTTCTGATGAAGGTGTTCCTGTGGTTGTTTCTTCACCGGGTTCTATAGTGTCAAAAGC 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 AGGTTCTGATGAAGGTGTTCCTGTAGTTGTTTCTTCACCGGGTTCTATAGTGTCAAAAGC 964
Query 840 TTATGAAGATCTAGCTCTAAACGTGGTGAAAGGACTCAAGGAGCTAAGAGATAATCCAGA 899
|||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 965 TTATCAAGATCTAGCTCAAAACGTGGTGAAAGGACTCAAGGAGCTAAGAGAGAATCCAGA 1024
Query 900 GAATGAGATTCAGATGAAGCTAAATGTTCCTCATTCTAGCC-C--ATCATAAAACAAACA 956
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1025 TAATGAGATTCAGATGAAGCTAAATGTTCCTCATTCTAGCCACTCATCATAGAACAAACA 1084
Query 957 CTTATATATGACCAAAGTTTTGTCTTGCTGCCTCACTTTCTCAGATTTTTGTACCAAAGA 1016
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1085 CTTATATATGACCAAAGTTTTGTCTTGCTGCCTCACTTTCTCATATTTTTGTACCAAAGA 1144
Query 1017 GAGTGTTTGCGAAGAGAAGAATGTA-TTTG-TAGATGATAAAAGCAATAGAGCCAGTCAC 1074
|| ||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1145 GAATGTTTGCAAAGAGAAGAATGTAATTTGCT-GATGATAAAAGCAATAGAGCCAGTCAC 1203
Query 1075 TGTTTATGAACC 1086
||||||||||||
Sbjct 1204 TGTTTATGAACC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5