BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492915
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19460.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2416 0.0
> AT4G19460.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr4:10610309-10612005 REVERSE LENGTH=1697
Length=1697
Score = 2416 bits (1308), Expect = 0.0
Identities = 1481/1565 (95%), Gaps = 10/1565 (1%)
Strand=Plus/Plus
Query 1 TTTGTGAATCCTTTAATTGAACAAGCGGAATCAACACAACAACACATTGTGAAGAAGAAA 60
||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 31 TTTATGAATCCTTTAATTGAACAAACGGAACCAACACAACAACAGATTGTGAAGAAGAAA 90
Query 61 G--AAAA-AACAATGGCTTCACAAACCAAAATCAAGAAACCTAATTCTCATTTTAGTCTT 117
| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 91 GAAAAAACAACAATGGCTTCACAAACCAAACTCAAGAAACCTAATTCTCATTTTAGCCTT 150
Query 118 TGTACTTTCCTCTTCTTCACCGTCCTCTTTACCAtcccggctctcttcctcctccgcacc 177
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 151 TGTACTTTCCTCTTCTTCACCGTCCTCTTTACCATACCGGCTCTCTTTCTCCTCCGCACC 210
Query 178 tcctcttgctcctcctccacggccgcagt-t--tcctcctcctctGACACAAACCAGCCA 234
||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||
Sbjct 211 TCCACTTGCTCCTCCTCCACCGCTGCAGTCTCCTCCTCCTCCTCTGACACAAACCAGCCA 270
Query 235 CCGTGGTCTGGCGACCTCCAAACCGCCCAATTTGCTTGGAACCGTCTTGATTTCTCCTTA 294
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 271 CCGTGGTCTGGCGACCTCCAAACCGCCCAATTTGCCTGGAACCGCCTTGATTTCTCCTTA 330
Query 295 ACCAACCCTCCTCCAAAAACCCTAAAACTCGCTGTTTTCTCCCGGAAATGGCCCACTGGG 354
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 331 ACCAACCCTCCTCCCAAAACACTAAAACTCGCTGTTTTCTCCCGGAAATGGCCCAC-GGG 389
Query 355 -CCCAATCCCGGTGGCATGGAACGCCATGCTTTCACTCTCTACACTGCTTTAGCTCGCCG 413
|||||||| || |||||||||||||| || |||||||| ||||| || |||||||||||
Sbjct 390 TCCCAATCCTGGCGGCATGGAACGCCACGCCTTCACTCTATACACCGCCTTAGCTCGCCG 449
Query 414 TGGACACCGCGTCCACGTTTTCACCTCTCCTTTAGACCAATCCCCTGAAACCAACAAAAT 473
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 450 TGGACACCGTGTCCACGTTTTCACCTCTCCCTTAGACCAATCCCCTGAAACCAACAAAAT 509
Query 474 CCCCCCTGTTTCCGACCAAATCCTATACCCTATAATCCATTCTCACGGCGACGCTGAGCC 533
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 510 CCCCCCTGTTTCCGACCAAATCATTTACCCTATAATCCATTCTCACGGCGACGCGGAGCC 569
Query 534 CGGAAAATGGCGGTATAACAAAGCATGGGAGCTTTACCAAGAAGAAAACAAGAGAGAACC 593
||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 570 CGGAAAATGGCGGTACAACAAGGCATGGGAGCTTTACCAAGAAGAAAACAAGAAAGAACC 629
Query 594 TTTCGACGCGGTTCACTCCGAAAGCGTGGCCTTACCTCACTGGATCGCCAGGGAGGTTCC 653
|||||| ||||||||||| ||||| || || |||||||||||||||||| ||||||||||
Sbjct 630 TTTCGATGCGGTTCACTCTGAAAGTGTTGCTTTACCTCACTGGATCGCCCGGGAGGTTCC 689
Query 654 AAACCTCGCCGTATCCTGGCATGGCATTGCGTTAGAGAGCTTACAATCAAGCATTTACCA 713
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 690 AAACCTCGCTGTATCCTGGCACGGCATTGCGTTAGAGAGCTTACAATCAAGTATTTACCA 749
Query 714 AGACCTGATTCGGAAACCAGACGAACCAAGATCACAGGGCTTCAATGCAAGTCTATACGG 773
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 750 AGACCTGATCCGTAAACCAGACGAACCAAGATCACAAGGCTTCAATGCAAGTCTATACGG 809
Query 774 TGCCGTGCTTCCCAAGATACTCGACGAAATCAGATTCTTCCACAACTACGCTCACCACAT 833
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGCCGTGCTTCCCAAGATACTGGACGAAATCAGATTCTTCCACAACTACGCTCACCACAT 869
Query 834 CGCAATCAGCGATAGCTGCGGAGAAATGCTAAGAGACGTTTACCAAATCCCTGAGAAAAG 893
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CGCTATCAGCGATAGCTGCGGAGAAATGCTAAGAGACGTTTACCAAATCCCTGAGAAAAG 929
Query 894 GGTTCACGTGATTCTTAATGGAGTCGACGAAAACGGATTCACATCAGACAAGAAGCTACG 953
|||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 930 GGTTCATGTGATCCTCAATGGAGTCGACGAGAACGGATTCACATCAGACAAGAAGCTACG 989
Query 954 TTCTCTGTTTAGGTCAAAATTAGGGTTACCAGAAAACTCATCAGCGATTGTTTTAGGAGC 1013
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TACTCTGTTTAGGTCAAAATTAGGGTTACCAGAAAACTCATCAGCGATTGTTTTAGGAGC 1049
Query 1014 TGCTGGGAGATTGGTTAAAGACAAAGGACATCCATTACTCTTCGAAGCTTTTGCGAAACT 1073
|||||||||||| || |||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1050 TGCTGGGAGATTAGTCAAAGACAAAGGACATCCATTGCTCTTCGAAGCTTTCGCGAAAAT 1109
Query 1074 AATCCAAACATATTCAAATGTTTACCTAGTAGTAGCTGGATCAGGGCCATGGGAGCAACG 1133
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1110 AATCCAAACGTATTCAAATGTTTACCTCGTAGTAGCTGGATCAGGGCCATGGGAGCAACG 1169
Query 1134 CTACAAAGAATTAGGCGAAAAAGTTTCCATTTTGGGATCTCTAAACCCAAATGAGCTCAA 1193
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TTACAAGGAATTAGGGGAAAAAGTTTCCATTTTGGGATCTCTAAACCCAAATGAGCTCAA 1229
Query 1194 GGGTTTCTACAACGGGATCGATTTGTTCGTAAATCCAACGCTTAGACCACAAGGTCTTGA 1253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1230 GGGTTTCTACAACGGGATCGATTTGTTCGTGAATCCAACGCTTAGACCACAAGGTCTTGA 1289
Query 1254 TTTAACGTTAATGGAAGCGATGTTGAGTGGTAAACCAGTGATGGCGTCTAGGTACGCAAG 1313
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1290 TTTAACGTTAATGGAAGCGATGTTGAGTGGTAAACCAGTGATGGCATCTAGGTACGCAAG 1349
Query 1314 CATAAAGAGGAGTATAGTGGTGAATGATGAGTTTGGGTTTATGTTTGCGCCGAATGTGGA 1373
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1350 CATAAAGAGGACTATAGTGGTGAATGATGAGTTTGGGTTTATGTTTGCGCCAAATGTGGA 1409
Query 1374 AGCTTTGACGGCGGTTATGGAGGTTGCAGTTGCGGAAGGAACAGAGAGATTGGCGGAGAG 1433
||||||||||||||||||||||||||| || || |||||| | |||||||||||||||||
Sbjct 1410 AGCTTTGACGGCGGTTATGGAGGTTGCTGTGGCTGAAGGAGCGGAGAGATTGGCGGAGAG 1469
Query 1434 AGGGAGGAAGTGTAAAGAGTATGCGGCGGAGATGTTTACGGCTAGTAAGATGGCTTTGGC 1493
||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1470 AGGAAGGAAGTGTAAAGAGTATGCTGCGGAGATGTTTACGGCGAGTAAAATGGCTTTGGC 1529
Query 1494 TTATGAGAGGCTTTTTCTTTGTATTAACGATCAGAAATTTTGTATCTACCACT-AATTAG 1552
||||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||
Sbjct 1530 TTATGAGAGGCTTTTTCTTTGTATTAATGATCAGAAATTTTGTATTTACC-CTTAATTAG 1588
Query 1553 TAAGA 1557
|||||
Sbjct 1589 TAAGA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5