BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492918
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 804 0.0
> AT4G19430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10598445-10599151
REVERSE LENGTH=707
Length=707
Score = 804 bits (435), Expect = 0.0
Identities = 535/582 (92%), Gaps = 11/582 (2%)
Strand=Plus/Plus
Query 28 ATAGTCTTATGGCTACTAAATTCGTCATCCTCACTCAAATCCACCGCCCTAAAACCCTGA 87
||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 56 ATAGTCTCATGGCTACTAAATTCATCACCCTCACTCAAATCCACCGCCCTAAAACCCT-A 114
Query 88 -TTTCAACCTCAAAATCTCGTCGATGCAGTCGAAACAAACCCAAACCATCCAAATCCAAA 146
|||| ||| |||||||||||||| ||| | | |||||||||||||||| |||| |||
Sbjct 115 CTTTCCACCACAAAATCTCGTCGACGCAATAGTAACAAACCCAAACCATTCAAAACCATC 174
Query 147 AGCGAAAACATGCTGACCAACGTCTTTTCTGGCAAAACGCTAACAGAAATCTATCACAAT 206
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 175 AGCGAAAACATGTTGAACAACGTCTTTTCTGGCAAAACGCTAACAGAAATCTACCATAAT 234
Query 207 AAGACAAATTCACACCCTCTTACTAATCCACTACTGTTTATTGAAGATCAGTCCTTAAAA 266
|| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 235 AAAATAAATTCACACCCTCTTACTAATCCACTACTGTTTATTGAAGATCCGTCCGTAAAA 294
Query 267 GACGAGGAGACGAATCAACAAGAACATGGGAAGGTCTCAATCAAAGATGGTAAGTCGATA 326
|| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 295 GAAGAGGAGACGAATCAACAAGAACACGGGAAGGTCTCAAACAAAGATGGTAAGTCCATA 354
Query 327 ACCGCGAGCAAATACGGAGATTTGAGGCGTGACGTTGCTCGATTAAGCTTGTTGTGGTAC 386
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 355 ACCGCGACCAAATACGGAGATTTGAGGCGTGATGTTGCTCGATTAAGCTTGTTGTGGTAC 414
Query 387 ATGAAATGTTCCATAAGCCATATATTAAGGAAGGCAAGAGCGTTTTACAATGAGTTTTGT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATGAAATGTTCCATAAGCCATATATTAAGGAAGGCAAGAGCGTTTTACAATGAGTTTTGT 474
Query 447 TGTGATACTTATGCTGAGAGTAACACTATGGCTGTGGTTGATCCATATTTTTCTATTCCG 506
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 475 TGTGATACTTATGCTGAGAGTAACACTATGGCTGTGGTAGAGCCATATTTTTCTATTCCG 534
Query 507 GTAATTAATTAATATCTCCAAATCTACGTAATTAAGAATTGTATTTAATCATAATTAGCT 566
|||||||||||||| ||||||||| |||||||||| ||||||||||| | | | |||| |
Sbjct 535 GTAATTAATTAATACCTCCAAATCGACGTAATTAAAAATTGTATTTA-T-A-A-TTAG-T 589
Query 567 AGTAAAATGTTTCAGTGGCTTTGTTGTGTTGTAATATG-TGT 607
| ||| ||||||| | | |||||||||||||||| || |||
Sbjct 590 A--AAA-TGTTTCATTAGTTTTGTTGTGTTGTAATGTGATGT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5