BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492919
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19420.1 | Symbols: | Pectinacetylesterase family protein |... 2676 0.0
> AT4G19420.1 | Symbols: | Pectinacetylesterase family protein
| chr4:10587166-10590588 REVERSE LENGTH=1832
Length=1832
Score = 2676 bits (1449), Expect = 0.0
Identities = 1602/1673 (96%), Gaps = 21/1673 (1%)
Strand=Plus/Plus
Query 5 tttttttttttttGGTTTCACGAAAACGAACGGATCAGTGTCGGCTCTTGGGTTCCGAAC 64
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 27 TTTTTTTTTTTTTGGTGTCACGAAAACGAACGAATCAGTGTCGGCTCTTGGGTTCCGAAC 86
Query 65 aaaaaaaaCATTGTACGTCGGATCCAAACAAAACGCGCGTTTTACAAACGCTTAATTTCT 124
||||| ||||||||||||||||||| || |||||||||||| || |||||||||||||||
Sbjct 87 AAAAACAACATTGTACGTCGGATCC-AA-AAAACGCGCGTTATATAAACGCTTAATTTCT 144
Query 125 CCGGGA---TTCTTCTGCTTCCACCATTGTTCGAAAATCGCGTCTTCTGACAATGTGCTG 181
|| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 145 CCAGGATTCTTCTTCTGCTTCCGCCATTGCTCGAAAATCGCGTCTTCTGACAATGTGCTG 204
Query 182 AAACTGAGTCATCGTCCGAGTTAGCAAAGTGAAACTTCGAAGTTTCTCTTACACTAATCT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 AAACTGAGTCATCGTCCGAGTTAGCAAAGTGAAACTTCGAAGTTTCTCTTACACTAATCT 264
Query 242 CAGGTTTGGGATTTTGTAAGAAAACCGCGTTTACAAAATGTTCAAGTTCAAGAAATGGTT 301
|||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 265 CAGGTTTGGGATTTTGTAAG-AAACCGCGTTTACAAAATGTTCAAGTTGAAGCAATGGTT 323
Query 302 GATTCT-TTTGGTGTGTTCGTTAGTAATAATGAAGACAGAAGGACTCTTTGTTAATATTA 360
|||| | ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 324 GATT-TATTTGGTGTGTTCGTTAGTAATAATGAACACAGAAGGACTGTTTGTCAATATTA 382
Query 361 CATTTGTTCGAAACGCAGTCGCAAAAGGGGCCGTTTGTTTAGATGGAAGTCCACCAGCTT 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 383 CATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGTTTGTTTAGATGGAAGTCCACCAGCTT 442
Query 421 ATCATTTAGATAGAGGTTCTGGAACTGGAATCAATAGCTGGTTGATACAGCTTGAGGGAG 480
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 443 ATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGGGAG 502
Query 481 GAGGATGGTGCAATAATGTAACAAATTGCATTAGTCGGATGCATACTCGGTTAGGTTCAT 540
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 503 GAGGATGGTGCAATAATGTAACAAATTGCGTTAGTCGGATGCATACTCGATTAGGTTCAT 562
Query 541 CGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATA 622
Query 601 ATCCTGATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGCTCATCATTCA 660
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 623 ATCCTGATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATTCA 682
Query 661 CAGGAGATGT-GCAAGCAGTGAACCCCGCTACTAATCTTCACTTCAGAGGTGCTCGAGTT 719
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 683 CAGGAGATGTAG-AAGCAGTGAACCCTGCTACTAATCTTCACTTCAGAGGTGCTCGAGTT 741
Query 720 TGGCTT-GCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATGCTGT 778
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TGG-TTAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATGCTGT 800
Query 779 TTTGTCTGGGTGTTCCGCTGGCGGGTTAGCTTCGCTGATGCATTGTGACAGTTTCCGTGC 838
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 801 TTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGC 860
Query 839 TCTATTACCAATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGtttttttCTCAACAC 898
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TCTATTACCGATGGGAACCAAAGTAAAATGTCTTTCAGATGCTGGTTTTTTTCTCAACAC 920
Query 899 AAGAGATGTCTCAGGAGTTCAATACATTAAATCATACTTCGAAGATGTGGTTACTCTTCA 958
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 921 AAGAGACGTCTCAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCA 980
Query 959 TGGATCAGCAAAGAACTTGCCGAGGTCGTGCACATCAAGATTAACTCCTGCAATGTGTTT 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 981 TGGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGATTAACTCCTGCAATGTGTTT 1040
Query 1019 CTTTCCGCAATATGTGGCTCGCCAGATTAGAACTCCTCTGTTCATTCTTAATGCCGCTTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CTTTCCGCAATATGTGGCTCGCCAGATTAGAACTCCTCTGTTCATTCTTAATGCCGCTTA 1100
Query 1079 CGACTCTTGGCAGATAAAGAACATTTTGGCTCCGCGTGCTGCTGATCCTTACGGAAAATG 1138
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1101 TGACTCTTGGCAGATAAAGAACATTTTGGCTCCGCGAGCAGCTGATCCTTACGGAAAATG 1160
Query 1139 GCAAAGTTGCCAACTAGACATCAAGAATTGTCATCCAAGTCAGATCAAAGTTATGCAAGA 1198
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1161 GCAAAGTTGTCAACTAGACATCAAGAATTGCCATCCAAGTCAGATCAAAGTTATGCAAGA 1220
Query 1199 TTTCAGGTTGGAGTTCTTGAGTGCAGTGATAGGTTTAGGGAGATCTTCATCAAGAGGGAT 1258
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TTTCAGGTTAGAGTTCTTGAGTGCAGTGATAGGTTTAGGGAGATCTTCATCAAGAGGGAT 1280
Query 1259 GTTCATAGATTCTTGCTACACTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GTTCATAGATTCTTGCTACACTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCA 1340
Query 1319 AGATTCTCCAATTCTAAACCGAACGACAATAGCAAAAGCTGTTGGAGATTGGGTTTATGA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 AGATTCTCCAATTCTAAACCGAACGACAATAGCAAAAGCTGTTGGAGATTGGGTTTATGA 1400
Query 1379 CAGAACATTGTTTCAGAAGATAGATTGTCCTTACCCTTGTAACCCTACTTGCCACCACAG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 CAGAACATTGTTTCAGAAGATAGATTGTCCTTACCCTTGTAACCCTACTTGCCACCACAG 1460
Query 1439 GGTTTTCACTCCTCTAGATGCTCCTCCAATTTAAGAGGTTCTACTATATAACATATATAT 1498
||||||||||||||||||||||||||||||||||| | |||||| ||||| || ||||
Sbjct 1461 GGTTTTCACTCCTCTAGATGCTCCTCCAATTTAAGTGATTCTACCATATA-CAG-TATA- 1517
Query 1499 AGATTTATTATTATTTTTGAAAAGAAAATATGCTTATAAATGATTGATTGGTCAGATA-- 1556
|||||||||||||||| ||||||||||| ||||||||||||||| ||| || |||||
Sbjct 1518 -GATTTATTATTATTTT-GAAAAGAAAATTTGCTTATAAATGATTCATTTGTTAGATACA 1575
Query 1557 TATAGTGAGATATTCATAGGGTTTAGCTATagaagaagagagagagaaaaagagTGTGAT 1616
|||||||| |||||| |||||||||||||||||||| || | | ||||||||||||||||
Sbjct 1576 TATAGTGAAATATTCCTAGGGTTTAGCTATAGAAGATGAAA-A-AGAAAAAGAGTGTGAT 1633
Query 1617 TAATTCAAGAGTGTTGAGAATAAGCAATAGGAGTAATTTTCTTCAGCACTTGT 1669
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TAATTCTTGAGTGTTGAGAATAAGCAATAGGAGTAATTTTCTTCAGCACTTGT 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82479495435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5