BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492921
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19410.1 | Symbols: | Pectinacetylesterase family protein |... 2172 0.0
AT5G45280.2 | Symbols: | Pectinacetylesterase family protein |... 924 0.0
> AT4G19410.1 | Symbols: | Pectinacetylesterase family protein
| chr4:10582021-10585758 REVERSE LENGTH=1475
Length=1475
Score = 2172 bits (1176), Expect = 0.0
Identities = 1362/1449 (94%), Gaps = 23/1449 (2%)
Strand=Plus/Plus
Query 1 GAAGACAACCATGGCTGGCTTCCATAAACTTTTAAAGCTCTCTCTTTCAGATTCCTCTCT 60
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGACATCAATGACTGGCTTCCATAAACTTTTAAAGCTCTCTCTTTCAGATTCCTCTCT 60
Query 61 ATCCATCTCATTAACACACCAAAAACAAAACTTTTTTCTTCTCTCTAACCAAACAAGAAT 120
|||||| ||||| | ||||| ||||| | ||||||||||||||||||||||||| |
Sbjct 61 ATCCATTTCATT-A-ACACC-AAAAC----C-TTTTTCTTCTCTCTAACCAAACAAG-A- 110
Query 121 TTAGAGGACTCCATTTTCACAAGAATGGGGAGGCTTAAGCAATGTTGGTCAAGTTTGCTA 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 111 --AGAGGACTCCATTTTCGCAAGAATGGGGAGGCTTAAGCAATGTTGGTCAAGTCTGCTA 168
Query 181 GTGTTGGCAGTGGTGGTGATCGGAACCGGAGCCGTTCCCATCACTTATCTACAAAGCGCC 240
|| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 169 GTATTGGCAGTGTTGGTGATCGGAACTGGAGCCGTTCCCATCACTTATCTCCAAAGCGCC 228
Query 241 GTTGCCAAAGGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTATCATTTCGACAAAGGG 300
|| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 229 GTCGCTAAAGGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTACCATTTTGACAAAGGG 288
Query 301 TTTGGTTCGGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTTGGTTCGGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGAC 348
Query 361 GTCGCTTCATGTAATGAACGTAAGGGTACAATGAAGGGTTCGTCCAAATTCATGAACAAA 420
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 349 GTTGCTTCATGTAATGAACGTAAGGGTACAATGAAGGGTTCTTCCAAATTCATGAACAAA 408
Query 421 GACTTTGGATTTTCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTTTACAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 GACTTTGGATTTTCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTCTACAAT 468
Query 481 TGGAACAGAATCAAAGTACGATATTGCGATGGGTCATCCTTTACCGGCAATGTAGAAGCC 540
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 469 TGGAACAGAATCAAAGTACGATATTGTGACGGATCATCCTTTACCGGCAATGTAGAAGCC 528
Query 541 GTTAATCCGGCGAATAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGATTGAT 600
||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 529 GTTAATCCGGCAAACAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGGTTGAT 588
Query 601 GATCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCGATACTCTCCGGTTGTTCAGCC 660
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 GATCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCT 648
Query 661 GGAGCATTGGCCGCGATTCTACATTGTGACACTTTCCGTGCCATACTTCCCCGAACAGCT 720
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 GGAGCATTGGCTGCGATTCTTCATTGTGACACTTTCCGTGCCATACTTCCCCGAACAGCT 708
Query 721 AGCGTCAAATGTGTTTCCGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGA 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGCGTCAAATGTGTTTCTGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGA 768
Query 781 TCATACA-TCGAATCGTACTACAGCAAAGTCGTCGCGCTCCATGGATCTGCAAAGAGTCT 839
||||||| || |||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 769 TCATACATTC-AATCATATTACAGCAAAGTCGTCGCACTCCACGGATCTGCAAAGAGTCT 827
Query 840 TCCTGTTTCTTGCACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCCCAATATGTCGT 899
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 828 TCCTGTTTCTTGTACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCGCAATACGTCGT 887
Query 900 TCCTTCCATGCGAACACCGCTCTTTGTCATCAACGCCGCCTACGATTCATGGCAGATCAA 959
||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||
Sbjct 888 TCCTTCCATGCGAACACCGCTCTTTGTCATCAATGCCGCTTTTGATTCTTGGCAGATCAA 947
Query 960 GAACGTTTTGGCTCCCACTGCTGTTGATAAGGGAAAACAATGGAAGAATTGTAAGCTTGA 1019
||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 948 GAACGTTTTGGCTCCAACTGCTGTTGATAAGGGAAAAGAGTGGAAGAATTGTAAGCTTGA 1007
Query 1020 TCTCAAGAAATGTAGTGCCGCTCAGCTCAAAACCGTCCAAGGGTTTAGAGATCAGATGAT 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TCTTAAGAAATGTAGTGCCGCTCAGCTCAAAACCGTCCAAGGGTTTAGAGATCAGATGAT 1067
Query 1080 GCGTGCATTATCACCGGTTCACAGTACACCGTCGAGAGGGTTGTTCTTAGACTCGTGTCA 1139
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1068 GCGAGCATTGTCACCGGTTCACAGTACACCGTCTAGAGGATTGTTCTTAGACTCGTGTCA 1127
Query 1140 CGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCAAATCGC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1128 CGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCAAGTCGC 1187
Query 1200 TAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTTTTATGGTCGGAGTGCATTTCAGAA 1259
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1188 CAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTTTTATGGCCGGAGTGCATTTCAGAA 1247
Query 1260 GATAGACTGTCCGTCGCCGACTTGTAATCCTACGTGTCCTGCAATTTCAACTGAAGACTA 1319
|||||| |||||||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct 1248 GATAGATTGTCCGTCGCCGACTTGTAATCCTACTTGTCCTGCTATCTCTACTGAAGACTA 1307
Query 1320 GAATCATCT--AAATGTTCAATTTTT---AATTTCAA-TTAAAAGATCTCTCGAACATTT 1373
||||||||| ||||||||||||||| ||||| || || ||||| ||| | |||||||
Sbjct 1308 GAATCATCTCTAAATGTTCAATTTTTTTTAATTTGAAATTGAAAGAGCTCGCAAACATTT 1367
Query 1374 TGGATTTGTTTTCCAAATCGGATCAATAAT---CACTGCAATTTGAATAAAGAGTATCTT 1430
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1368 TGGATTTGTTTTCCAAATCGGATCAATAATAATCACTGCAATTTGAATAAAGAGTATATC 1427
Query 1431 TTTACTTTG 1439
|||||||||
Sbjct 1428 TTTACTTTG 1436
> AT5G45280.2 | Symbols: | Pectinacetylesterase family protein
| chr5:18345595-18349695 FORWARD LENGTH=1496
Length=1496
Score = 924 bits (500), Expect = 0.0
Identities = 1027/1274 (81%), Gaps = 66/1274 (5%)
Strand=Plus/Plus
Query 81 AAAAACAAAACTT-TTTTCTTCTCTCTAAC-CAAACAAGAATTTAGAGGACTCCATTTTC 138
||||| ||||||| ||||| | ||||| || || |||||| | || || | |||||||
Sbjct 54 AAAAA-AAAACTTCTTTTC-T-TCTCT-ACGTGAATAAGAATCT-GAAGAGT-CATTTTC 107
Query 139 ACAAGAATGGGGAGGCTTAAGC-AATGTTGGTCAAG--TTTGCTAGTGTTGGCAGTGGTG 195
|||||||| | |||| || | |||| |||||||| ||| ||||| | || ||||||
Sbjct 108 TCAAGAATGACGTGGCTAAAACAAATG-TGGTCAAGCATTT--TAGTGCTAGCCGTGGTG 164
Query 196 GTGATCGGAACCGGAGCCGTTCCCATCACTTATCTACAAAGC-GCCGTTGCCAAAGGAGC 254
||||||||| || |||| || |||||||| ||||| || | || || || ||||||||
Sbjct 165 GTGATCGGAGCCAGAGCTGTGCCCATCACGTATCT-TGAATCTGCAGTGGCTAAAGGAGC 223
Query 255 CGTGTGTTTGGATGGGAGTGCACCAGCTTATCATTTCGACAAAGGG-TTTGGTTCGGGTG 313
|||||||||||||| || || ||||| || |||||||| ||||| | || || || |
Sbjct 224 TGTGTGTTTGGATGGTAGCGCGCCAGCATACCATTTCGA-TAAGGGATCGGGCTCAGGAG 282
Query 314 TTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGATGTCGCTTCATGTA 373
| |||||||||||||| || ||||| |||||||||||||| || ||| | ||| ||||
Sbjct 283 TGAACAATTGGATCGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTACATGCG 342
Query 374 ATGAACGTAAGGGTACAATGAAGGGTTCGTCCAA-ATTCATGAACAAAGACTTTGGATTT 432
| ||||||| |||||||||||||||| || || || ||||||||||||||||| |||
Sbjct 343 TTCAACGTAAAAGTACAATGAAGGGTTCTTCTAAGCTT-ATGAACAAAGACTTTGG-TTT 400
Query 433 -TCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTTTACAATTGGAACAGAAT 491
||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||
Sbjct 401 CTCCGGTATCTTGGGTGGCAAGCAAAGCACCAATCCAGACTTTTACAATTGGAATAGAAT 460
Query 492 CAAAGTACGATATTGCGATGGGTCATCCTTT-ACCGGCAATGTAGAAGCCGTTAATCCGG 550
|||||| || ||||||||||| ||||| ||| ||||| || ||||||| ||| |||||
Sbjct 461 CAAAGTTCGGTATTGCGATGGTTCATC-TTTCACCGGTGATATAGAAGCTGTTGATCCGA 519
Query 551 CGAATAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGATTGATGATCTTATGG 610
|| | ||||||||||| |||||||| | ||||||||||||||||| |||||||||||||
Sbjct 520 CGCACAAGCTGTTCTTTCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGATCTTATGG 579
Query 611 CTAAAGGAATGAAAAACGCTCAAAACGCGATACTCTCCGGTTGTTCAGCCGGAGCATTGG 670
|||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 580 CTAAGGGAATGAGCAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGGAGCATTGG 639
Query 671 CCGCGATTCTACATTGTGAC-ACTTTCC-GTGCCA-TACTTCCCCGAA-CAGCTA-GCGT 725
| |||||||||||||| ||| | || | || ||| | || ||| || | |||| | ||
Sbjct 640 CTGCGATTCTACATTGCGACCAGTT-CAAGT-CCACT-CT-CCCTAAAACGGCTAAG-GT 694
Query 726 CAAATGTGTTTCCGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGATCATA 785
|||||||||||| || || |||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 695 CAAATGTGTTTCTGACGCTGGTTACTTCATCCACGGTAAGGATATCACTGGAGGATCTTA 754
Query 786 CATCGAATCGTACTACAGC-AAAGTCGTCGCG-CTCCATGGATCTGCAAAGAGTCTTCCT 843
|||| |||| |||||| || |||||||| ||| | ||| ||||||||||||||||| |||
Sbjct 755 CATCCAATCCTACTAC-GCCAAAGTCGTAGCGAC-CCACGGATCTGCAAAGAGTCTACCT 812
Query 844 GTTTCTTGCACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCCCAATATGTCGTTCCT 903
| |||||||||||||| ||||| || || | ||||||||||| ||||| || | |
Sbjct 813 GCTTCTTGCACCTCAAGTATGAAGCCTGATTTGTGTTTCTTCCCTCAATACGTTGCTAAG 872
Query 904 TCCATGCGAACACCGCTCTTT-GTCATCAACGCCGCCTACGATTCATGGCAGATCAAGAA 962
|| | | ||||||||| ||| |||||||| ||||||| |||||| ||||||||||||||
Sbjct 873 ACCTTACAAACACCGCT-TTTCGTCATCAATGCCGCCTTCGATTCTTGGCAGATCAAGAA 931
Query 963 CGTTTTGGCTCCCAC-TGCTGTTGATAAGGGAAAA-CAATGGAAGAATTGTAAGCTTGAT 1020
|| ||||| || || | |||||||||| | ||| || ||||||| |||||||||||||
Sbjct 932 TGTATTGGCACCAACCT-CTGTTGATAAAAGCAAAGCA-TGGAAGACTTGTAAGCTTGAT 989
Query 1021 CTCAAGAAATGTA-GTGCCGCTCAGCT-CAAAACCGTCCAAGGGTTTAGAGATCA-GATG 1077
|| ||||| |||| | ||||||||||| |||| |||| ||||| | |||||| || | ||
Sbjct 990 CTTAAGAAGTGTACG-GCCGCTCAGCTTCAAA-CCGTTCAAGGATATAGAGACCAAG-TG 1046
Query 1078 ATG-CGTGCATTATCACCGGTTCACAGTACACCGTCGA-GAG-GG-TTGTTCTTAGACTC 1133
|| | ||| || | || |||| | | | | | ||| || || |||||||| |||||
Sbjct 1047 TTGGC-TGCGTTGGCGCCTGTTCG-A-TCCGC-GACGACGAACGGATTGTTCTTGGACTC 1102
Query 1134 GTGTCACGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCC-C 1192
||| || |||||||||||||| |||||||| ||| |||||||||| |||||||||||| |
Sbjct 1103 GTGCCATGCTCATTGCCAAGGTGGAAGCGCTGCCACTTGGTCCGGCGACAAAGGTCCCAC 1162
Query 1193 AAATCGCTAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTT-TTATG-GTCGGAGTGC 1250
| |||| ||||||| ||| || || || || ||| | ||||| || || | ||||| |
Sbjct 1163 AG-TCGCGAATACGAAAATGGCTAAGGCGGTTGGAGATTGGTTCTT-TGAGA-GGAGTAC 1219
Query 1251 ATTTCAGAA-GATAGACTGTCCGTCGCCGACTTGTAATCCTACGTGTCCTGCAATTTCAA 1309
|||||||| | |||| ||| | |||| | ||| || ||||| || |||||| | || |
Sbjct 1220 GTTTCAGAACG-TAGATTGTTCATCGCTTAATTGCAACCCTACTTGCCCTGCAGTATCTA 1278
Query 1310 CTGAAGACTAGAAT 1323
|||||||||| |||
Sbjct 1279 CTGAAGACTAAAAT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5