BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492923
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19390.1 | Symbols: | Uncharacterised protein family (UPF01... 1282 0.0
> AT4G19390.1 | Symbols: | Uncharacterised protein family (UPF0114)
| chr4:10574768-10576428 REVERSE LENGTH=1030
Length=1030
Score = 1282 bits (694), Expect = 0.0
Identities = 899/990 (91%), Gaps = 46/990 (5%)
Strand=Plus/Plus
Query 1 CCACACCTGGTTGACTCAACCACGA--C-T--CAAAGCAGCCATGACGACGCCGTGCCGG 55
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 32 CCACACCTGGTTGACTCAACCACGATTCGTCCCTAAGCAGCCATGACGACGCCGTGCCGG 91
Query 56 ACCATTAACGCTAATGCTATCGCCGCACCATCGTCTTCGGGATTGATCTTCAACGGGTTT 115
||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 92 ACCATTAACGCTAATGCTATCGCCGCACCGTCGCCTTCGGGATTGATCTTTAACGGGTTT 151
Query 116 CGAGATTTTGTTCCAATCGATAAGAGGCTTGTTATATCAAGCTCTCGCGGCTTGCAATTA 175
|| ||||| || || || || |||||||||||||||||||||| ||| |||||| || ||
Sbjct 152 CGTGATTTCGTCCCGATTGAAAAGAGGCTTGTTATATCAAGCTTTCGTGGCTTGAAACTA 211
Query 176 CCGTTGATGACAACGAAGTCGGTTACGAGCTCTG-CTTGGCGTTGGAGTTATAGGTCTCC 234
|||| || ||| |||||| | |||||||||||| | ||| |||||||||||||||||||
Sbjct 212 CCGTCGAGGACGACGAAGACTATTACGAGCTCTGAC-TGGAGTTGGAGTTATAGGTCTCC 270
Query 235 GGGAAGA------T-T--GTCT--G----CGTCTGCGTCTACGTCT--G--T--GGCTGT 273
||||||| | | |||| | ||||||||||||||||| | | ||||||
Sbjct 271 GGGAAGATTGGCGTCTGCGTCTACGTCTACGTCTGCGTCTACGTCTACGTCTGCGGCTGT 330
Query 274 AACATCGAATTCTGCGAATAGATTTGAAGTTTTAGAAGAGGGTATTGAGAAGGTCATTTA 333
||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 331 AACATCGAATTCTACGAATAGATTTGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA 390
Query 334 TAGTTGTCGATTTATGACGTTTCTTGGAACATTAGGATCTTTGCTCGGATCGGTTCTCTG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TAGTTGTCGATTTATGACGTTTCTTGGAACATTAGGATCTTTGCTCGGATCGGTTCTCTG 450
Query 394 TTTTATCAAGGGATGTATGTATGTTGTAGACTCGTTTTTGCAGTATTCGGTGAATCGTGG 453
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TTTCATCAAGGGATGTATGTATGTTGTAGACTCGTTTTTGCAGTATTCGGTGAATCGTGG 510
Query 454 GAAGGTGATATTCCTTTTGGTTGAGGCCATAGATATATATCTCCTAGGAACTGTGATGTT 513
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GAAAGTGATATTCCTTTTGGTTGAGGCCATAGATATATATCTCCTAGGAACTGTGATGTT 570
Query 514 GGTCTTTGGACTGGGACTTTACGAGTTGTTCATCAGCAATCTCGACACTTCAGAGTCGCG 573
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 571 AGTCTTTGGATTGGGACTTTACGAGTTGTTCATCAGCAATCTCGATACTTCAGAGTCGCG 630
Query 574 CTCACACGATATTGTTTCCAATAGGTCGAGCCTCTTTGGCATGTTCACTTTAAAGGAGCG 633
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 631 CACACACGATATTGTTTCCAATAGGTCGAGCCTCTTTGGCATGTTCACCTTAAAGGAGCG 690
Query 634 ACCTCAATGGTTAGAGGTGAAATCAGTAAGCCAGCTGAAAACGAAGTTGGGACATGTAAT 693
|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 691 ACCTCAATGGTTAGAGGTGAAATCGGTAAGCGAGCTGAAAACAAAGTTGGGACATGTAAT 750
Query 694 AGTGATGCTACTATTGATTGGTTTGTTTGACAAGAGCAAGAAAATAGTCATAACTTCTGT 753
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 751 AGTGATGCTACTATTGATTGGTTTGTTTGACAAGAGCAAGAGAGTAGTCATAACTTCTGT 810
Query 754 CACGGATTTGCTATGTATCTCTGTTTCTATCtttttttCTTCTGCTTGTCTCTTCTTGCT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CACGGATTTGCTATGTATCTCTGTTTCTATCTTTTTTTCTTCTGCTTGTCTCTTCTTGCT 870
Query 814 CTCTAGGCTCAATGGGTCACATTGAG---TTAATGGTTTTGTCCCAAAACAAAATAAACT 870
||||||||||||||| ||||| |||| |||||||| |||||||||||||||| |||||
Sbjct 871 CTCTAGGCTCAATGGTTCACACTGAGGAGTTAATGGTGTTGTCCCAAAACAAAAGAAACT 930
Query 871 TTGTATGTTGTGTATGTGTATAATGTTTTAGCAAAGTTTCA-CTTTCTCTTTT-GTTCAT 928
|||||||| || || | | ||||||||||| | | || ||| ||||||| ||||||
Sbjct 931 TTGTATGT-GT--AT----A-A-TGTTTTAGCAACGCTCCATCTT-CTCTTTTTGTTCAT 980
Query 929 -ATAT-T-GTTTTTCTCTGACTTTGAGTTT 955
|||| | |||| ||||||||||||| |||
Sbjct 981 TATATATTGTTTCTCTCTGACTTTGATTTT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5