BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492927
Length=2760
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 4010 0.0
> AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799
Score = 4010 bits (2171), Expect = 0.0
Identities = 2566/2755 (93%), Gaps = 34/2755 (1%)
Strand=Plus/Plus
Query 21 AAA-CCTGAGAATTTATTGTTCCGGTCATGTAATCTACTCTCTAAGGCACTCAATTTTTC 79
||| ||||||| |||||||||||||||| ||||| ||||||| ||||| ||||||| ||
Sbjct 41 AAAGCCTGAGACTTTATTGTTCCGGTCACATAATCGACTCTCTTAGGCATTCAATTTCTC 100
Query 80 GCCGGGAA---T--AT-CGG----TCTTCTAATT-TTCACTTCAGTAAGATAAAACATGA 128
| | |||| | | ||| | |||||||| || |||||||||||| ||||||| |
Sbjct 101 G-CTGGAATTCTCCTTCCGGCTATTGTTCTAATTATT-ACTTCAGTAAGAGAAAACATAA 158
Query 129 GCGACACTTCACGTCCTCTGTTTTGTCTCCAGTTACTCCTAGTGTATATAACCTGTTCGA 188
|||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 159 GCGACACTTCACGTCCTCTGTTTTGTCTCCGGTTACTCCTATTGTCCATAACCTGTTCGA 218
Query 189 CGAAATGCCCAAGAGAGATAATAGGACTGTGGAGGCTAGTTTTATGTTCTTGCGAGATGT 248
|||| |||| ||||||| ||||||||| ||||| | || ||||||||||| ||||||||
Sbjct 219 CGAATTGCCTGAGAGAGAGAATAGGACTATGGAGTCGAGCTTTATGTTCTTACGAGATGT 278
Query 249 ACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTATCCATTGTTTCGC 308
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 279 ACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTGTCCATTGTTTCGC 338
Query 309 TCTGAAGTGTGGTTTCCTCCAAGATTTAGCTACATCTTCAAAGCTTCTAACGATTTACGG 368
||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 339 TCTGAAGTGTGGTTTACTCCAAGATTTAGCTACATCTTCGAAGCTTCTGACGTTTTACGG 398
Query 369 TAGAACCGGGGACTTGGTGTCTTCTTTGGGTCTGTTTGGTGAATTGAAAGAGAAAGATGT 428
|||||||||||| || || ||||||| | ||||||||| |||||||||||||||||||||
Sbjct 399 TAGAACCGGGGAGTTAGTATCTTCTTCGTGTCTGTTTGATGAATTGAAAGAGAAAGATGT 458
Query 429 GATTGTTTGGAACAGTATGATCACTAG-TTTGAATCAAAATGGTCGTTACATGGCAGCTG 487
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 459 GATTGTTTGGAACAGTATGATCACT-GCTTTGAATCAAAATGGTCGTTACATTGCAGCTG 517
Query 488 TTGGATTGTTCGTTGAGATGATTCATAAGGGGAATGAGTTTGATTCGACCACGCTTTTAC 547
|||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 518 TTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTTTAC 577
Query 548 TTGCAGTTTCGGCGTTATCTAGTTTACATCTTTCAAAG-AAATGTCCAATGGTTCATTGT 606
|||||| ||| |||||||||||| |||||||||| || |||||| ||||| ||||||||
Sbjct 578 TTGCAGCTTCTGCGTTATCTAGTCTACATCTTTC-GAGAAAATGTTCAATGCTTCATTGT 636
Query 607 TTGGCAATAGAGACTGGTTTGGTTTCGGATTCTAGCTTGTGCAATGCATTGATGAATCTA 666
|| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 637 TTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGAATCTA 696
Query 667 TATGCAAAAGGCGAGGACTTGAGCTCCGCAGAGTGCGTGTTCACGCATATGGAGCACCGA 726
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 697 TATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGTGTGTGTTCACGCATATGGAGCATCGA 756
Query 727 GACATTGTTTCTTGGAACACGATCATGACTAAATGTCTTGCAAATGGGT-ATCCCAGGAA 785
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 757 GACATTGTTTCTTGGAACACGATCATGACTAAATGTCTTGCAAAT-GGTCATCCCAGGAA 815
Query 786 TTCGCTG-ATATATTTCAAGTCGATGATTGGTTCAGGACAAGAAGCTGATAATGTGACTT 844
||| || | ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 816 ATCGTTGCA-ATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTT 874
Query 845 TTTCATGCGTTATATCAGCTTGCTCTTGTCTTGAAGAACTTCCTTTGGGTGAATCCCTCC 904
||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||| ||||
Sbjct 875 TTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCC 934
Query 905 ACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGCCAACTCGA 964
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 935 ACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGA 994
Query 965 TCATTTCGATGTACTCAAAATGTGGGGACATC-GAGGCTGCGGAAACTGTGTTTGAAGAA 1023
|||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 995 TCATTTCGATGTACTCAAAATGCGGGGACA-CGGAGGCTGCGGAAACTGTGTTTGAAGAA 1053
Query 1024 TTATTGTGCAAGGATGTTATTTCTTGGAATGCAATCCTTAATGGGCTTT-CTGCAAATGG 1082
||| |||||| |||||||||||||| ||| ||||||||||||||| ||| ||||||||||
Sbjct 1054 TTAGTGTGCAGGGATGTTATTTCTTCGAACGCAATCCTTAATGGG-TTTGCTGCAAATGG 1112
Query 1083 AATGTTTGAGGAAGCATTTGGTATTTTGAAGGAAATGCAGTCGGTGGATAAGATTCAGCC 1142
||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1113 AATGTTTGAAGAAGCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCC 1172
Query 1143 TGATATCTCCACCGTGGTTTCAATAACTTCCATATGTGGTGATTTTTGTTTGTCACGAGA 1202
||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1173 TGATATCGCCACTGTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGA 1232
Query 1203 GGGAAGAGCAATTCATGGTTATATGGTTCGCAGGGAGATGCAATCCAGAGCATTAGAGGT 1262
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1233 GGGAAGAGCAGTTCATGGTTATACGGTTCGCATGGAGATGCAATCCAGAGCATTAGAGGT 1292
Query 1263 AATAAACAGCGTTATTGATATGTACGGTAAATGTGGCTTAACAAGTCAGGCTGAGTTTTT 1322
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 1293 AATAAACAGCGTTATTGATATGTATGGTAAATGTGGCTTAACAACTCAGGCTGAGTTGTT 1352
Query 1323 GTTCAAGACCACAACACATCGAGACTTGGTTTCGTGGAACTCGATGATATCTGCTTT-TG 1381
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1353 GTTCAAGACAACAACACATCGAGACTTGGTTTCGTGGAACTCGATGATATCTGCTTTCT- 1411
Query 1382 CGCAAAACGGGTTTACACA-AGAAGCTAAGAATCTGTTCAGGGAAGTTGTCAGTGAGTAT 1440
|||||||||| ||||| || | |||||||||||||||||| |||||||||||||||||||
Sbjct 1412 CGCAAAACGGCTTTACGCACA-AAGCTAAGAATCTGTTCAAGGAAGTTGTCAGTGAGTAT 1470
Query 1441 ACTTGTTCAAAGTTTAGCTTGTCGACTGTGTTGGCAATTCTTACGTCTTGTGATTCCTCT 1500
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1471 TCTTGTTCAAAGTTTAGCTTGTCAACTGTCTTGGCAATTCTTACGTCTTGTGATTCCTCT 1530
Query 1501 GATTCTCTCATTTTTGGAAAATCAGTCCACTGTTGGCTGCAAAAGCTAGGGGACCTAACT 1560
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 GACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAGCTAGGGGACCTAACT 1590
Query 1561 TCAGCATTTCTTCTGTTAGAGATGATATTCGAAACAAGGGATCTCACATCTTGGAACTCT 1620
|||||||| || | |||||||| ||| | ||||||||| |||||||||||||||||||||
Sbjct 1591 TCAGCATTCCTGCGGTTAGAGACGATGTCCGAAACAAGAGATCTCACATCTTGGAACTCT 1650
Query 1621 GTTATCTATGGCTGCGCATCAAGTGGTCACCATTTAGAATCATTGAGAGCGTTTCAAGCA 1680
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GTAATCTCTGGCTGCGCATCAAGTGGTCACCATTTAGAATCATTGAGAGCGTTTCAAGCA 1710
Query 1681 ATGAGTCGTGAAGGGAATATTCGTCATGACTTGATTACTCTTCTGGGTACTATTTCAGCT 1740
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1711 ATGAGTCGTGAAGGGAAAATTCGTCATGACTTGATTACTCTCCTGGGTACTATTTCAGCT 1770
Query 1741 AGTGGAAACCTCAGACTGGTCTTACAAGGAAGGTGCCTTCATGGTCTAGCTATTAAAAGT 1800
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1771 AGTGGAAACCTCGGACTGGTCTTACAAGGAAGGTGCTTTCATGGTCTAGCTATTAAAAGT 1830
Query 1801 CTGAGAGAACTTGACACCCAACTGCAGAATACGTTGATCACCATGTATGGTAGATGTAAA 1860
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1831 CTAAGAGAACTTGACACCCAACTGCAGAATACATTGATCACCATGTATGGTAGATGTAAA 1890
Query 1861 GACACTGAGAGTGCAGTGAAGGTTTTTGGCTTGATCTCTGACCCTAACTTGTGTTCCTGG 1920
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1891 GACATTGAGAGTGCAGTGAAGGTTTTTGGCTTAATCTCTGACCCTAACTTGTGTTCTTGG 1950
Query 1921 AACTGTGTGATATCAGCTTTATCTCAGAACAAAGCTGGACGCGAAGTGTTTCAACTCTTC 1980
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1951 AACTGTGTGATATCAGCTTTGTCTCAGAACAAAGCTGGACGAGAAGTGTTTCAACTCTTC 2010
Query 1981 AGAAACCTCAAGTTAGAGCCAAACGAGATCACATTTGTTGGTCTTCTGTCTGCCTCGACT 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2011 AGAAACCTCAAGTTAGAGCCAAACGAGATCACATTTGTTGGTCTTCTGTCTGCGTCGACT 2070
Query 2041 CAGCTTGGGTCAACAAGCTATGGTATGCAGGCACACTGTCATCTCATTCGTCGTGGGTTT 2100
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2071 CAGCTTGGGTCAACGAGCTATGGTATGCAGGCACATTGTCATCTCATTCGTCGTGGGTTT 2130
Query 2101 CAAGCTAACCCTTTTGTCAGTGCAGCACTAGTGGATATGTACAGTAGCTGCGGGATGCTA 2160
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2131 CAAGCTAACCCTTTTGTCAGTGCAGCACTTGTGGACATGTACAGTAGCTGCGGGATGCTA 2190
Query 2161 GAAACTGGCATGAAGGTGTTTAGAAACTCGGGGGTGAAATCAATTTCTGCTTGGAACTCA 2220
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2191 GAAACTGGCATGAAGGTGTTTAGAAACTCGGGGGTGAATTCAATTTCTGCTTGGAACTCC 2250
Query 2221 GTTATCTCTGCATATGGATTCCATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAA 2280
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 GTTATCTCTGCACATGGATTCCATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAA 2310
Query 2281 ATGAGTAGTGGTAACTCAGGGATGAAACCAAACAAGAGCACTTTCATAAGCCTATTGTCA 2340
|||||||| ||||||| |||| ||||||||||||||| |||||||||||| ||||||
Sbjct 2311 CTGAGTAGT---AACTCAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCA 2367
Query 2341 GCTTGTAGCCACTCTGGGTTTATAAATGAAGGTCTAAGATATTACAACCAAATGGAGGAA 2400
||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct 2368 GCTTGCAGCCACTCTGGGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAA 2427
Query 2401 AAATTTGGGGTTAAACCAGTTACCGAGCATTGGGTTTGCATTGTTGACATGCTTGGCCGG 2460
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 2428 AAATTTGGGGTTAAACCAGTTACTGAGCATCGGGTTTGGATTGTTGACATGCTTGGCCGG 2487
Query 2461 GCAGGGAAGCTGAAAGAAGCTTATGAATTCATCATAGGGATTGGTGAGCCACAAAAAGCA 2520
|||||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2488 GCAGGGAAACTGAGAGAAGCTTATGAGTTCATCACAGGGATTGGTGAGCCACAAAAAGCA 2547
Query 2521 GGTGTGTGGGGAGCTTTGTTGAGCGCTTGTAACTATCATGGGGATACAAAGTTGGGAACA 2580
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2548 GGTGTATGGGGAGCGTTGTTGAGCGCTTGCAACTATCATGGGGATACAAAGTTGGGAAAA 2607
Query 2581 GAAGTTGCAGAAGTTTTGTTTGAATTGGAACCAGACAATGCATCTTATTACATCTCGTTG 2640
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2608 GAAGTTGCAGAAGTTTTGTTTGAAATGGAACCAGACAATGCATCTTATTACATCTCGTTG 2667
Query 2641 GCGAATACTTATGTTGGGTTGGGTGGTTGGGATGAAGCTGTACGGCTACGGAAGATTGTG 2700
|| |||||||||||||| ||||| |||||||| ||||||||| | ||||||||||| |||
Sbjct 2668 GCAAATACTTATGTTGGATTGGGAGGTTGGGAAGAAGCTGTAAGACTACGGAAGATGGTG 2727
Query 2701 GAGGATAATGCATTGAAGAAGCTACCTGGTTACAGTGTTATTGACGTTAG-TGTT 2754
||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 2728 GAGGATAATGCCTTGAAAAAGCTTCCTGGTTACAGTGTTATTGACGTTAGGTGTT 2782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137106255219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5