BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492935
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19160.2 | Symbols: | unknown protein; Has 35333 Blast hits... 2769 0.0
> AT4G19160.2 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10477306-10480141
FORWARD LENGTH=2022
Length=2022
Score = 2769 bits (1499), Expect = 0.0
Identities = 1873/2037 (92%), Gaps = 92/2037 (5%)
Strand=Plus/Plus
Query 2 agagagagagaagagaACTACTCTGATATAAAAACCCTAGATTTCTTCTC-TAAAACCCA 60
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 4 AGAGAGAGAGAAGAGAACTACTCAGATATAAAAACCCTAGATTTCTTCTCTTAAAACCCA 63
Query 61 CATCGAATCTCAACTCAGAA-C--CAA-----CAA----T-GC-TCCAAC-C---TTTCT 102
|||||||||||||||||||| | ||| ||| | | ||| | | |||||
Sbjct 64 CATCGAATCTCAACTCAGAACCAACAATGCTCCAACCTTTCTCTTCCTCCTCTGTTTTCT 123
Query 103 CGAG-A--------ACTTTCTTGGTTT-AG--GAATCCTTGTTGAATC--AGAG--AGAA 146
|||| | ||||||||||||| || || || |||||||||| |||| ||||
Sbjct 124 CGAGAATCCTCTGGACTTTCTTGGTTTAAGAAGATTCGTTGTTGAATCAGAGAGAAAGAA 183
Query 147 AGCATCCATTTTTTCATCATTGC-TTGCTTGCTTGCTATGGAATTGGGTAAATCTCGATT 205
|||||||| |||||| | | | | ||||||||||||||||||||||||||||||||||||
Sbjct 184 AGCATCCA-TTTTTC-T-A-T-CATTGCTTGCTTGCTATGGAATTGGGTAAATCTCGATT 238
Query 206 CTA-TT-TG-TGCAATTGCTTTTCTCCTGTTAGGTTTTCCGATTATTCTTTAGCTGGAAG 262
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 CTACTTATGTTGCAATTGCTTTTCTCCTGTTAGATTTTCCGATTATTCTTTAGCTGGAAG 298
Query 263 TGATTATCCAGACGCCATATCCATGAATTT-GATTCCCAAACCTTCT-TCTTCTTCTGAA 320
|||||||||||||||||| ||||| | ||| ||| | || | | |||||||||||
Sbjct 299 TGATTATCCAGACGCCATCTCCATCACTTTCAATT-GTATTCC-TATACCTTCTTCTGAA 356
Query 321 GATTCTTCGTATCTT-TCGATTCGATGCTTATAAACTTC-AATCTCTCTTCCAAATCTTG 378
|||||||||||| || ||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 357 GATTCTTCGTAT-TTCTCGATTCGATGTTTATAAACTTCAAAT-TCTCTTCCAAATCTTG 414
Query 379 AAACGATTTTCTTCCAAAAATCTCCCT-TTTC-TCTCTCCCAATCACTCAAACAATGTTG 436
|||||| ||||| |||||||||| || |||| || | || || |||||||||||
Sbjct 415 AAACGAATTTCTCCCAAAAATCT--CTGTTTCTTCACAAAAAAACAAAAAAACAATGTTG 472
Query 437 TGTGCATCATCTTCGTTTGCTCTTTTGGGTCCTGCTTCTT---C-A----G-CTATGGCT 487
||||||||||||||| ||||||||||||||||| |||||| | | | ||||||||
Sbjct 473 TGTGCATCATCTTCGCTTGCTCTTTTGGGTCCTCCTTCTTCAGCTATGGTGACTATGGCT 532
Query 488 TCTTCACCAGTTTCCAGATTTGTTGGATTTGGTCATCATACTACTCTCAGGTATGATCAT 547
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 533 TCTTCACCAGTGTCCAGATTTGTTGGATTTGGTCATCATACTATTCTCAGGTATGATAAT 592
Query 548 GATCAACG---TCGTCGTCGTTGTTC-TGGAC-----TTGAAAAGAAGATCCCTTTTCCT 598
|||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 593 GATCAACGTCTTCGTCGTGGTTGTTCTTGGACTGGAATTGAAAAGAAGATCCCTTTTCCT 652
Query 599 CGGAATAGGACTGCCTCAGCTTCTGCTTACCCTCTCTTTCTCAGTCAGCTTACTAAAGAC 658
||||| | ||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 653 CGGAAGAAGACTGCCTCTGCTTCTGCTTACCCTCTCTTTCGCAGTCAGCATACTAAAGAC 712
Query 659 TCACCACCAAGACCCAGAAATTACCAAGAGGTCACTAAGTCAGCCCGGCAATTGTTTGCT 718
| || ||||||||| ||||||| ||||||| |||||||||||| ||||| ||||||||
Sbjct 713 T---CATCAAGACCCAAAAATTACAAAGAGGTTACTAAGTCAGCCAGGCAAATGTTTGCT 769
Query 719 CGAGAGATCTCTATCCAATCGAAAGACAGTGAAATTTCGATTGCAAAGGTTCTCTTCTAC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGAGAGATCTCTATCCAATCGAAAGACAGTGAAATTTCGATTGCAAAGGTTCTCTTCTAC 829
Query 779 ATTGCTGCTGAAGATGAAGCCTTCTTGGCTATAAACCGAGAGAGGGATGCTCAGTCACTC 838
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 830 ATTGCTGCTGAAGATGAAGCCTTCTTGGCTGTTAACCGAGAGAGGGATGCTCAGTCACTC 889
Query 839 ATGAAGGAGAGGGAAAGTGTACAAGATCAGTCTGATCCGAGTGACACAGATTCTGAGGAG 898
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 890 ATGAAGGAGAGGGAAAGTGTACAAGATCAGTCTGATCCGAGTGAGACAGACTCTGAGGAG 949
Query 899 CTATTGCAGTTAGATGGAAAGAGTATATCTGAGTGGGTGAGTGAAATAGATGCAATTTCC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CTATTGCAGTTAGATGGAAAGAGTATATCTGAGTGGGTGAGTGAAATAGATGCAATTTCC 1009
Query 959 AAAGATGTAGAGGCAGAATTAGTCTCACGAGATATCGGCTGCCACTTGGTTCAAGTTCTT 1018
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1010 AAAGAAGTAGAGGCAGAGTTAGTCTCACGAGATATCGGCTGTCACTTGGTTCAAGTTCTT 1069
Query 1019 GAAGCTGTAAATACAGTTCTCTTCGATCTGAGAGGCTTCAAGAGGACATCTATTACTTTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GAAGCTGTAAATACAGTTCTCTTCGATCTGAGAGGCTTCAAGAGGACATCTATTACTTTA 1129
Query 1079 GACCCGGAGAATTCCTACCTTCACTCTGTACTTAACTGTAGATGCAGCACTGCATTTCTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1130 GACCCGGAGAATTCCTACCTTCACTCTGTACTTAACTGTAGATGCAGCACTGCGTTTCTG 1189
Query 1139 ATTAGTGTAATATACATTGAAGTTTGTAAGCGCCTCAATGTGCCAATTGTTGGATCTCCA 1198
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1190 ATTAGTGTAATATACATTGAAGTTTGTAAGCGCCTGAATGTACCAATTGTTGGATCTCCA 1249
Query 1199 GTTGGGGAAGATTTTCTGATTTGGCCTAAAACGGAGTATCCTGAGGAACTCTTTAAAGCC 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GTTGGGGAAGATTTTCTGATTTGGCCTAAAACGGAGTATCCTGAGGAACTCTTTAAAGCA 1309
Query 1259 ACTTCAGGACAGAGCTTGTTCTCTATTGTCAATGGAAGGTGCGTTGATGATCCTGGATCA 1318
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1310 ACTTCAGGACAGAGCTTGTTCTCTATTGTCAATGGAAGGTGTGTTGATGATCCTGGATCA 1369
Query 1319 ATGGCATCAGACTTAACTGCAAAATCACTTCAAGACCTCGACATTGCAACAAACAGAGAC 1378
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1370 ATGGCATCAGACTTAACTGCAAAATCACTTCAAGACCTCGACATGGCAACAAACAGAGAC 1429
Query 1379 ATTATAGGGATTGCTCTTGCCAATTTGATTAGGCTTCACTGGAGACGTGCTTCGAAGTCA 1438
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1430 ATTATAGGGATTGCTCTAGCCAATTTGATTAGGCTTCACTGGAGACGTGCTTCTAAGTCA 1489
Query 1439 TCCCCTGGACTAATGCTGACTTCTCCTCTTAGTCAACTTAACAACATCAGTAGTTCTAAT 1498
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TCCCATGGACTTATGCTGACTTCTCCTCTTAGTCAACTTAACAACATCAGTAGTTCTAAT 1549
Query 1499 TTCCCATTGTTGCGGCCTCAAGATCTTAGGTTGGCTATTGCGGCTGCAGAAAGGTTGTTG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TTCCCATTGTTGCGGCCTCAAGATCTTAGGTTGGCTATTGCGGCTGCAGAAAGGTTGTTG 1609
Query 1559 ATTTTGCAACCTCATAACTGGGCACTTCGCAGAGACCTTGGTATGATGCTGTACTACGAC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ATTTTGCAACCTCATAACTGGGCACTTCGCAGAGACCTTGGTATGATGCTGTACTACGAC 1669
Query 1619 AGGCAATATGGAGAGGCGGTACAAGAGCTGAGCATATGTATGGCATTTGCTCCTCCTGAA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AGGCAATATGGAGAGGCGGTACAAGAGCTGAGCATATGTATGGCATTTGCTCCTCCTGAA 1729
Query 1679 GAAGAAGCTGTGTTGGAGCCATTTGTAGAGAGACTTCATCTACTTCGTCTCATATCTTCA 1738
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1730 GAAGAAGCTGTGTTGGAGCCATTTGTAGAAAGACTTCATCTCCTTCGTCTCATATCTTCA 1789
Query 1739 TTGAAGCCTCTTGGCTCTGATCGCTTGACCGTTCCTTGACGtctctctctctctctctct 1798
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1790 TTGAAGCCTCTTGGTTCTGATCGCTTGACCGTTCCTTGACTTCTCTCTCTCTCTCTCTCT 1849
Query 1799 actccacttgtagattcactctctttctttctcggtgtctctGTTGTGTTTGAAGAACCT 1858
|||||||||||| |||||||||||||||||||| ||| | || |||||||||||||||
Sbjct 1850 ACTCCACTTGTAAATTCACTCTCTTTCTTTCTC--TGT-T--GT-GTGTTTGAAGAACCT 1903
Query 1859 TTGTAGTAGGAGACTTGGAGCTTT-GTTGTTTGTTGTAG-T--A--A--CT-CTACTGTT 1909
|||||||||||||| ||||||||| ||||||||||||| | | | || ||||||||
Sbjct 1904 TTGTAGTAGGAGACATGGAGCTTTTGTTGTTTGTTGTAACTCTACTAGACTACTACTGTT 1963
Query 1910 GTTTTCTGATCAGATCTAATGGATTTGGGCCTCCAGCTAAATTTTGACTTTCCCGTG 1966
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1964 GTTTTCTAATCAGATCTAATGGATTTGGGCCTCCAGCTAAATTTTGAGTTTCCCGTG 2020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97389057300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5