BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492939
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1552 0.0
AT4G19150.1 | Symbols: | Ankyrin repeat family protein | chr4:... 110 4e-23
> AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469664-10471390
FORWARD LENGTH=1193
Length=1193
Score = 1552 bits (840), Expect = 0.0
Identities = 1003/1077 (93%), Gaps = 30/1077 (3%)
Strand=Plus/Plus
Query 1 TTGTTCTGAGT-AGA---ACTCA-C-TCACCGGAGAAGATA--GT--ATGGATTCCGAAG 50
||||||||||| | | ||||| | ||||||||||||| | || |||||||||||||
Sbjct 120 TTGTTCTGAGTAAAACTCACTCACCGTCACCGGAGAAGAAAGTGTAAATGGATTCCGAAG 179
Query 51 AAACGACGTCGTCGGTGACGACGACAAAGAAGCAAAAGAGGGTTTTCTCTTCGTTAGCTT 110
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACGACGTCGTCGGTAACGACTACAAAGAAGCAAAAGAGGGTTTTCTCTTCGTTAGCTT 239
Query 111 TGCGATTCTGTACAGTGCTAGTCTTCTCGATCATCAGCTTCGTCGTCTTGTCGTTTCTAT 170
|||||||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 240 TGCGATTCCGTACAGTGATAGTTTTCTCGATCATTAGCTTCGTCGTCTTGTCGTTTCTAT 299
Query 171 TAGGAATCTTAGTGATTTTCATCGGTGAATTGTGGGTTTATTCATT-TTCTTCTTCTTCT 229
||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||
Sbjct 300 TAGGAATCTTAGTGATTTTCATCGGTGAATTGTGGGTTTATTC-TTCTTCATCTGCTTCT 358
Query 230 GCTTCTCTTCATTCCCGCTGCAAAATTGTTTCCAGCTCTGTTGATCTAAGGTCTTCTAAA 289
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 GCTTCTCTTCATTCTCGCTGCAAAATTGTTTCCAGCTCTGTTGATCTTAGGTCTTCTAAA 418
Query 290 GTGTGTGGCATTGGATTATTGAACATCAAAGCACAACATGTGTTTTACCCTTTTGAGAGA 349
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 GTGTGTGGCATTGGACTATTGAACGTCAAAGCACAACATGTGTTTTACCCTTTTGAGAGA 478
Query 350 GATAAATTCAGATGTCGTTATGATTACTATTGGGCTTCTGTCTTCAAGGTTGTAGAGTAT 409
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 479 GATAAATTCAGATGTCGTTATGATTACTACTGGGCTTCTGTCTTCAA-G--GTAGAGTAT 535
Query 410 AAAGATAACTTAATCGGTCAAACACGGCTAGCGTTTTCAGAAGCTCCAAATGAAGCTCTT 469
|||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 536 AAAGATAACTTAATGGGTCAAACACGGTTAGCGTTTTCAGAAGCACCAAATGAAGCTCTT 595
Query 470 CCTCCTGAGTGCAGACCTAACTTTGGTGCTGCGTTGCTTACTAAAGATAACTTCAAGGTG 529
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 596 CCTCCTGAGTGCAGACCTAACTTTGGTGCTGCATTACTTACCAAAGATAACTTCAAGGTT 655
Query 530 AATGAGACTTATGATTGCTGGTACACATTAGGGATTCCAAAGATAAAGCTTTATCGGGAT 589
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AATGAGACTTACGATTGCTGGTACACATTAGGGATTCCAAAGATAAAGCTTTATCGGGAT 715
Query 590 AGCTTTTTCGGTTGCCAAGCAAATGATCTTTCTTTCACCGACATTGTTAAGCAATACTCT 649
||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct 716 AGCTTTTTCGGTTGCCAAGCAGATGATCTTTCTTTCACTGACATTGCTAAGCAATACTCT 775
Query 650 GTTGTAATCTCTAAACTTTTACAGTCATGGTTTAATGGAGAAGCAACACCAAAGTACTGG 709
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 776 ATTGTAATCTCTAAACTTTTACAGTCATGGCTTAATGGAGAATCAACACCAAAGTACTGG 835
Query 710 AAATATGATGTGATCGCTGGCACTGTCTCTGGCTTCGCAACTTCCATAATCATAGTCTTC 769
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 836 AAATATGATGTGATCGCTGGCATTGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTC 895
Query 770 ATCGTACGGATCTTACGACATGCAAAATCTTGGTTCCCTCGAGCTTGTTGTTCAGTGAAG 829
||| || |||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 896 ATCATAAGGATCTTAAGACATGCAAAATCTTGGTTCCCTCAAGCTTGTTGTTCAGTTAAG 955
Query 830 AGCCAGTTTTCTAAGGTGAATCTCTTGGTACAAGTGAAGCGTGCATGTTTGCTTCTTGTT 889
|| |||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 956 AGACAGTTTTCTAAGGTGAATATATTGGTACAAGTGAAACGTGCATGTTTGCTTCTTGTT 1015
Query 890 TACTTCTCGGTTCTCGGATGGATGGCGACACAATACTTGAAAATTCTTTTTCCAAAGGCT 949
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1016 TACTTCTCGGTTCTCGGATGGATGGCTACACAATACTTAAAAATTCTTTTTCCAAATGCT 1075
Query 950 TAGGA-------------GAGTG--AGTGAGTATGTAATGATTCGTAGACAGTTGTGTGA 994
||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 1076 TAGGAAAAAACATTACTTGAGAGTCAGTGAGTATGTAATGATTCGTAGACAGTTGTGTGA 1135
Query 995 TGTAATCTTAAATCATTTACAGAAAAAGAAAGCAATACAGAGAAACAGCTTTAAAGT 1051
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TGTAATCTTAAATCATTTACAGAAAAAGAAAGCAATACAGAGAAACAGCTTTAAAGT 1192
> AT4G19150.1 | Symbols: | Ankyrin repeat family protein | chr4:10471331-10472742
REVERSE LENGTH=1044
Length=1044
Score = 110 bits (59), Expect = 4e-23
Identities = 59/59 (100%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 993 GATGTAATCTTAAATCATTTACAGAAAAAGAAAGCAATACAGAGAAACAGCTTTAAAGT 1051
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GATGTAATCTTAAATCATTTACAGAAAAAGAAAGCAATACAGAGAAACAGCTTTAAAGT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5