BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492947
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19100.1 | Symbols: PAM68 | Protein of unknown function (DUF... 1022 0.0
AT4G19095.1 | Symbols: | unknown protein; Has 30201 Blast hits... 113 2e-24
> AT4G19100.1 | Symbols: PAM68 | Protein of unknown function (DUF3464)
| chr4:10453415-10454359 FORWARD LENGTH=683
Length=683
Score = 1022 bits (553), Expect = 0.0
Identities = 638/679 (94%), Gaps = 6/679 (1%)
Strand=Plus/Plus
Query 1 TCGAAACAGAACAGAGAACCCAAAGAATCTCGAATGGCTTCTGTACCATGTTCCTTCAAG 60
||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||
Sbjct 10 TCGAAACAGAACATAGAA-CGAAAGAA---AGAATGGCTTCTGTACCATGTTCCTTCAAG 65
Query 61 CTCTCTGCTCATCCCAGATCTTCTTCCAAGCATGATGGAAACTACAAACAGTGTAGTAGC 120
||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 66 CTCTCTGCTCATCGTAGATCTTCTTCCAAGCTTGATGGAAACAACAAACAGTGTAGTAGT 125
Query 121 TTAGTAGAAAGACACAGAGACAAAACGAAGAGTCAAGTTCCTAAGTCCATTACTTGCATC 180
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 126 TTAGTAGAAAGACTGAGAGATAAAACGAAGAGTCAAGTTCCTAAGTCCATTACTTGCATT 185
Query 181 AACCGCTTGGAGATATCGCGTATAGCACCATTACACGCAACTATGAATAGCCCGAGAGGT 240
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 186 AACCGCTTAGAGATATCGCGTATAGCACCATTACACGCAACGATGAATAGCCCGAAAGGA 245
Query 241 TTTGGACCTCCTCCTAAGAAAACCAAGAAGTCGAAAAAGCCGAAACCTGGTAACCAAAGt 300
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 246 TTTGGACCTCCTCCTAAGAAAACCAAGAAGTCGAAAAAGCCAAAACCCGGAAACCAAAGT 305
Query 301 gacgaagaggacgacgatgaagacgaagatgatgatgatgatgaagatgaacgtgagaga 360
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 306 GATGAAGACGACGACGATGAAGACGAAGATGATGATGATGAAGAAGATGAACGTGAGAGA 365
Query 361 gGTGTGATTCCAGAGATAGTGACCAACAGAATGATTAGCAGAATGGGATTCACTGTGGGG 420
||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 366 GGTGTAATTCCAGAGATAGTGACCAACAGAATGATAAGCAGAATGGGATTTACAGTGGGG 425
Query 421 TTACCACTATTCATTGGTCTTTTGTTCTTCCCATTCTTTTACTATCTCAAAGTGGAATTG 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 426 TTACCACTCTTCATTGGTCTTTTGTTCTTCCCATTCTTTTACTATCTCAAAGTGGGATTG 485
Query 481 AAAGTTGATGTTCCTACATGGGTTCCGTTTATTGTTTCGTTCGTCTTCTTCGGTACGGCT 540
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 486 AAAGTTGATGTGCCTACATGGGTTCCGTTTATTGTTTCGTTCGTCTTCTTTGGTACGGCT 545
Query 541 TTAGCTGGTGTGAGCTACGGGATCGTGTCGTCGAGCTGGGATCCGTTGAGAGAAGGATCG 600
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 546 TTAGCTGGTGTGAGCTATGGGATCGTGTCTTCGAGCTGGGATCCGTTGAGAGAAGGTTCC 605
Query 601 TTGTTAGGCTGGAACGAAGCTAAGAAGAACTGGCCTGTCTTTTGGCAATC-TTTTAGGAA 659
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 606 TTGTTAGGCTGGAACGAAGCTAAGAAGAACTGGCCTGTCTTTTGGCAGTCCTTTT-GGAA 664
Query 660 TTCCTCAGACAAGAGATAG 678
|||||||||||||||||||
Sbjct 665 TTCCTCAGACAAGAGATAG 683
> AT4G19095.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10452889-10453521
REVERSE LENGTH=441
Length=441
Score = 113 bits (61), Expect = 2e-24
Identities = 81/90 (90%), Gaps = 4/90 (4%)
Strand=Plus/Minus
Query 1 TCGAAACAGAACAGAGAACCCAAAGAATCTCGAATGGCTTCTGTACCATGTTCCTTCAAG 60
||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||
Sbjct 98 TCGAAACAGAACATAGAA-CGAAAGAA---AGAATGGCTTCTGTACCATGTTCCTTCAAG 43
Query 61 CTCTCTGCTCATCCCAGATCTTCTTCCAAG 90
||||||||||||| |||||||||||||||
Sbjct 42 CTCTCTGCTCATCGTAGATCTTCTTCCAAG 13
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5