BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492949
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19060.1 | Symbols: | P-loop containing nucleoside triphosp... 1748 0.0
> AT4G19060.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:10444916-10446300
REVERSE LENGTH=1385
Length=1385
Score = 1748 bits (946), Expect = 0.0
Identities = 1169/1269 (92%), Gaps = 46/1269 (4%)
Strand=Plus/Plus
Query 1 GCAGACTTTGAAACCCAGAAATTCCTCCCATTTTAGt-tttttttCTTAGAAACACAAGA 59
|||||||||||||| ||||||||| ||||||| |||| ||||||||| ||||||||||||
Sbjct 1 GCAGACTTTGAAACACAGAAATTCTTCCCATTGTAGTGTTTTTTTCTCAGAAACACAAGA 60
Query 60 AGAGCTTATGGA-ACTTGCTGAGAAGTTTATATCTGAAATTGATGAGAAGCTCGAGCCTA 118
|||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||||| |||
Sbjct 61 AGAGCTTATGGATA-TTGCTAAGAAGTTCATATCTGAAATTGATGACAAGCTCGAGTCTA 119
Query 119 AATCTGAAATTGATAAAGAACTCGAGAAAATCAAGTCTTCCTTCAATGAAGAATATGAGA 178
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCAGAATTTGATAAAGAGCTCGAGAAAATCAAGTCTTCCTTCAATGAAGAATATGAGA 179
Query 179 AATGGTCGTGTGGAAAACAGAGTGGATCTTCCTCTAAGCATGGAAACCAGTCCACAGATG 238
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 180 AATGGTCGTCTGGAAAACAGAGGGGATCTTCCTCTAAGCATGGAAACCAGTCCACACATG 239
Query 239 GCGATTCATCGCCAACTCG---CA--A----CAGCAGTAAAAAAGGGCGGCCTAAGGCGA 289
| |||||||| |||||||| || | |||||||||||||||||||||||||||||
Sbjct 240 GTGATTCATCACCAACTCGTAACAGCAGCGGCAGCAGTAAAAAAGGGCGGCCTAAGGCGA 299
Query 290 ACCGTGTGGAGACGAGCTCTGAGCTTCCGGATCACGTCATTCATGGTTTCATAAACGAGA 349
||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 300 ACCGTGTGGAGACAAGCTCTGAGCTTCCGGATCACCTCATTCGTGGTTTCATTAACGAGA 359
Query 350 AACTGTTCTTGAAGAACTTCTTTCTGAAGCAAAAGGAATCCGAAGAGTTCAAGACTCGAG 409
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 360 AACTGTTCTTGAAGAACTTCTTGCTGAAGCAAAAGGAATCCGAAGAGTTCAAGACTCTAG 419
Query 410 CAATTGTGGGGAAATACGGAGTT-GGAAAGACGACATTGTGTCAGGATGTGTTCAACGAC 468
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 420 CAATTGTGGGGAAATACGGAGTTGGGAAA-ACGACATTGTGTCAGGCTGTGTTCAACGAC 478
Query 469 GAAGATGTGAAACAAGTCTATTTCCCGAGGATATGGGTTTCTATGTACAGCAAAGAAAC- 527
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAAGATGTTAAGCAAGTTTATTTCCCGAGGATATGGGTTTCTATGTACAGCAAAGAAACA 538
Query 528 -----A-A--AAGATCCCAAGATAGATGTTGTGAAGAGGATCTTGAGATTACTTGGAGTT 579
| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 AAAGAAGACGAAGATCCCAAGATAGATGTTGTGAAGAGGATCTTGAGATCCCTTGGAGTT 598
Query 580 GAAGATGAGATGTTTGAACACATCAAAACagaagcagaagaagagaagagaatcaaagat 639
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 GAAGATGAGATGTTTAAACACATCAAAACAGAAGCAGAAGAAGAGAAGAGTATCAAAGAT 658
Query 640 gaagctggggaaggaggggaagagaCAGTCAAACAAAAGGAGCTCGCTCGATTATTGTAT 699
|||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 659 GAAGCTGGGGAAAGAGAGGAAGAGACGGTCAAAGAAAAGGAGCTTGCTCGATTATTGTAT 718
Query 700 GCTCTTCACTTGCATCTGATTGGGAAGAAGTATCTGATCGTGTTGGACGATGTTTGGGAA 759
|||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 719 GCTCTTCACTTGAATCTGATTGGGAAGAAGTATCTGATAGTGTTGGATGATGTTTGGGAA 778
Query 760 GACAACAAGTGGGATCAAAGGCTCGATGAT---AAGAAGCAGCAGGAAAAATCACATCTT 816
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 779 GACAACGAGTGGGATCAAAGGCTCGATGATGAGAAGAAGCAACAGGAAAAATCACATCTT 838
Query 817 TCTTGTGGGTTTCCTAAAGGGTTTGGTGGGAGAGTGATTATGACTAGCAGAGACGAGAGA 876
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 TCTTGTGGGTTTCCTAAAGGGTTTGGTGGGAAAGTGATTATGACTAGCAGAGACGAGAGA 898
Query 877 TTGGCGAAGGAGATAGTCGGAGAAGAAGAGAATCTGCAGCGTTTGTTTCCGAGATCCGAT 936
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 899 TTGGCGAAGGCGATAGTCGGAGAAGAAGAGAATCTGCAGCGTTTGTTTCCAAGATCCGAT 958
Query 937 GCAGAGAGTTTATGGAACATTTACATTGAAGCAGTACCCACCAAGGTGGACGATGCAACA 996
|||||||| || ||| | ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 959 GCAGAGAGCTTGTGGGAGATTTACATTGATGCAGTACCCACCAAGGTGGACGATGCAGCA 1018
Query 997 GCCACGAATGCGGGCGATGCAGCAGCCACAAATGCGGCAGCCACAAATGCGGGCGATGCA 1056
||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1019 GCCACGAATTTGGGCGATGCAG----------T-----AGCCACAAATGCGGGCGATGCA 1063
Query 1057 GTAGACCCAAAAGTGAATCCGAGGTATCCGGGAAGATACAAACAAGAGCTTATGGATAAG 1116
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GTAGCCCCGAAAGTGAATCCGAGGTATCCGGGAAGATACAAACAAGAGCTTATGGATAAG 1123
Query 1117 TCTTGTGGTATTCCTTTGGCTGCTCGCATGCTGGCGAAGATTGAGCCTGTGAAAGTGGAT 1176
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 TCTTGTGGTATTCCTTTGGCTGCTCGAATGCTGGCGAAGATTGAGCCTGTGAAAGTGGAT 1183
Query 1177 GAAATTGGAAACATAGATAGGAAGCAAAGCTAAGCTTCTAACTTCTAACGCAATATCTAT 1236
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 1184 GAAATTGGAAACATAGATAGGAAGCA--G--A-GCTTCTAACTTCTAACGCAATATCTAT 1238
Query 1237 GTATTTACT 1245
|||||||||
Sbjct 1239 GTATTTACT 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5