BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492953
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19030.1 | Symbols: NLM1, NIP1;1, AT-NLM1, ATNLM1 | NOD26-li... 1740 0.0
AT4G18910.1 | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrin... 1018 0.0
> AT4G19030.1 | Symbols: NLM1, NIP1;1, AT-NLM1, ATNLM1 | NOD26-like
major intrinsic protein 1 | chr4:10421525-10423487 REVERSE
LENGTH=1172
Length=1172
Score = 1740 bits (942), Expect = 0.0
Identities = 1089/1159 (94%), Gaps = 13/1159 (1%)
Strand=Plus/Plus
Query 1 AACAGTCGTTTAAAGTTTAATCCTTTTCCTCTTCTTTGTTTCCAAAAAAGAGAAAAGTCA 60
|||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 17 AACAGTCGTTTATAGTTCAATCCTTTTCCTCTTCTTTGTTT-CTAAAAAGAGAAAAGTCA 75
Query 61 GTTATGGCGGATATCTCGGGAAACGGCTATGGCAACGCC--AG-AGAAGTAGTAATGGTG 117
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 76 CTTATGGCGGATATCTCGGGAAACGGCTATGGCAACGCCAGAGAAGAAGTAGTAATGGTG 135
Query 118 AATCTCAAGGAAGAAGTCGAACATCAACAACAAATAGAAG-CTTTTGATAACCCTACACC 176
||||||||||| |||||||||||||||||| |||| |||| | || ||||||| | |||
Sbjct 136 AATCTCAAGGATGAAGTCGAACATCAACAAGAAATGGAAGAC-ATTCATAACCCAAGACC 194
Query 177 CTTGAAGAAACAAGACTCCCTCCTCTCAGTCTCTGTCCCTTTCTTACAAAAGTTGATCGC 236
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 195 CTTGAAGAAACAAGACTCTCTACTCTCAGTCTCTGTCCCTTTCTTACAAAAGTTGATCGC 254
Query 237 GGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGTAAACAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGTAAACAT 314
Query 297 GCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTACCATCAT 356
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 315 GCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCTATCGTTTGGGGACTCACCATTAT 374
Query 357 GGTCCTCATTTACTCTCTTGGTCACATCTCCGGTGCTCATATCAATCCGGCCGTTACCAT 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 375 GGTCCTCATTTACTCTCTTGGTCACATCTCTGGTGCTCATATCAATCCGGCCGTTACCAT 434
Query 417 AGCCTTCGCGTCTTGCGGCCGTTTTCCTCTCAAACAGGTTCCGGCTTATGTCATATCACA 476
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 435 TGCCTTCGCCTCTTGTGGCCGTTTCCCTCTCAAACAGGTTCCAGCTTATGTCATATCACA 494
Query 477 AGTGATCGGATCAACGCTCGCGGCTGCGACTTTACGGTTGTTGTTCGGACTTGATCACGA 536
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 495 AGTGATAGGATCAACGCTCGCGGCTGCGACATTACGGTTGTTGTTCGGACTTGATCACGA 554
Query 537 CGTTTGTAGCGGGAAACATGATGTGTTTATCGGATCATCACCGGTGGGATCGGATCTGCA 596
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 555 CGTTTGTAGCGGAAAACACGATGTGTTTATCGGATCATCACCAGTGGGATCAGATCTTCA 614
Query 597 GGCGTTTGTGATGGAGTTTATTGTCACTTTCTATCTAATGTTCATCATTTCTGGCGTTGC 656
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGCGTTTACGATGGAGTTTATCGTCACTTTCTATCTAATGTTCATCATTTCTGGCGTTGC 674
Query 657 TACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGGTGCTACT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGGTGCTACT 734
Query 717 TAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAAGTTTAGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAAGTTTAGG 794
Query 777 ACCTGCAATGGTGTACGGTTGCTACAAAGGAATTTGGATCTACATAGTTGCTCCAACTCT 836
||||||| |||| || ||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 795 ACCTGCACTGGTCTATGGTTGCTACAAAGGAATTTGGATATACTTAGTTGCGCCAACTCT 854
Query 837 TGGTGCCATTGCGGGTGCATGGGTTTATAACACGGTTAGATATACCGATAAACCATTGCG 896
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 855 TGGTGCGATTGCGGGTGCATGGGTTTATAACACAGTTAGATATACCGATAAACCATTGCG 914
Query 897 AGAAATAACTAAAAGTGGTTCGTTTTTAAAGACCGTGCGAATCGGTAGCTCTTGATAAAA 956
|||||| |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| |
Sbjct 915 AGAAATCACTAAAAGTGGTTCATTTCTAAAGACCGTGAGAATCGGTAGCACTTGATAAGA 974
Query 957 GAAAAGAAAAGAAACCATGAAGT-GATGGAGTATTTTCAAATGAATGTAACAACTTTCAC 1015
|||||||||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 975 GAAAAGAAAACATGGG-TGGAGTTGATGGAGTATTTTCAAATGAATGTAACAACTTTCAC 1033
Query 1016 CACACCT-ACGTATATGGC-TT-GTATTAATTGCTACGTTTATCTCTTTCATT-TTAATG 1071
||||||| ||||||||||| || |||||||||||||||||||||||||| ||| |||| |
Sbjct 1034 CACACCTTACGTATATGGCCTTTGTATTAATTGCTACGTTTATCTCTTTTATTGTTAACG 1093
Query 1072 CCAAGATTTTCTATCTTGCTATTAATGTGTAACTGTATCGTATATTTTT-AAATAATAAA 1130
|||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1094 CCAAGATTCTCTATCTTGTTATTAATGTGTAACTGTATCGTATATTTTTTAAATAATAAA 1153
Query 1131 ATTCAATTCTGGAAAGATC 1149
|||||||||| ||||||||
Sbjct 1154 ATTCAATTCTAGAAAGATC 1172
> AT4G18910.1 | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic
protein 1;2 | chr4:10366059-10368381 FORWARD LENGTH=1239
Length=1239
Score = 1018 bits (551), Expect = 0.0
Identities = 841/978 (86%), Gaps = 31/978 (3%)
Strand=Plus/Plus
Query 1 AACAGTCGTTTAAAGTTTAATCCTTTTC-CTCTTCTTT-GTTTCCAAAAAAGAGAAAAGT 58
|||||||||||||||| | ||||||||| | |||||| || | ||||||| ||| |
Sbjct 90 AACAGTCGTTTAAAGTCTGATCCTTTTCATTTTTCTTTAGTGT-GTGAAAAGAG-AAA-T 146
Query 59 -CAGTTATGGCGGATATCTCGGGAAACGGCTATGGCAACGCCAGAGA---AG-TAGTAAT 113
||||||||||||| |||||||||||||| ||| | || ||||| || | || |
Sbjct 147 ACAGTTATGGCGGAGATCTCGGGAAACGG---TGGTGATGCTAGAGACGGAGCT-GTGGT 202
Query 114 GGTGAATCTCAAGGAAGAAGTCGAACATCAACAACAA-ATAGAAGCTTTTGATAACCCTA 172
||| |||||||||||||||| |||||| ||||||||| | | ||||| || || | |
Sbjct 203 GGTCAATCTCAAGGAAGAAGACGAACAACAACAACAACA-ACAAGCTATTCAT-A----A 256
Query 173 CACCCTTGAAGAAACAAGACTCCCTCCTCTC-AGTCTCTGTCCCTTTCTTACAAAAGTTG 231
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 257 -ACCCTTGAAGAAACAAGACTCTCTCCTCTCTA-TCTCTGTCCCTTTCTTACAAAAGTTG 314
Query 232 ATCGCGGA-GTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGT 290
|| ||||| |||| | ||||| ||||| ||| ||||| |||||||||| |||||| |||
Sbjct 315 ATGGCGGAGGTTT-TGGGAACATACTTCTTGATATTCGCCGGTTGTGCCGCGGTGGCTGT 373
Query 291 AAACATGCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTAC 350
||||| ||| | ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 374 AAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTAC 433
Query 351 CATCATGGTCCTCATTTACTCTCTTGGTCACATCTCCGGTGCTCATATCAATCCGGCCGT 410
| |||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 434 CGTCATGGTCCTTGTTTACTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGGCCGT 493
Query 411 TACCATAGCCTTCGCGTCTTGCGGCCGTTTTCCTCTCAAACAGGTTCCGGCTTATGTCAT 470
|| || || ||||| |||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 494 CACAATCGCATTCGCTTCTTGCGGCCGTTTCCCTCTTAAACAGGTTCCGGCTTATGTGAT 553
Query 471 ATCACAAGTGATCGGATCAACGCTCGCGGCTGCGACTTTACGGTTGTTGTTCGGACTTGA 530
|||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||
Sbjct 554 ATCACAAGTGATCGGATCAACGCTAGCGGCGGCGACTTTACGGCTCTTGTTCGGACTTGA 613
Query 531 TCACGACGTTTGTAGCGGGAAACATGATGTGTTTATCGGATCATCACCGG-TGGGATCGG 589
||| || |||||||| |||||||| |||||||| ||||| ||| ||| ||| ||||
Sbjct 614 TCAAGATGTTTGTAGTGGGAAACACGATGTGTTCGTCGGAACATTACCATCTGG-ATCGA 672
Query 590 ATCTGCAGGCGTTTGTGATGGAGTTTATTGTCACTTTCTATCTAATGTTCATCATTTCTG 649
|| ||||| |||||||||| |||||||| | |||||||| ||||||||| | |||||||
Sbjct 673 ATTTGCAGTCGTTTGTGATCGAGTTTATCATTACTTTCTACCTAATGTTCGTTATTTCTG 732
Query 650 GCGTTGCTACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGG 709
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 733 GCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCTGGACTAGCAGTAGGATCAACAG 792
Query 710 TGCTACTTAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAA 769
|||||||||||||| ||||||||| ||||||||| | || ||||||||||||||| |||
Sbjct 793 TGCTACTTAACGTGATAATTGCCGGGCCGGTATCGGGAGCATCGATGAATCCAGGACGAA 852
Query 770 GTTTAGGACCTGCAATGGTGTACGGTTGCTACAAAGGAATTTGGATCTACATAGTTGCTC 829
||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||| |||
Sbjct 853 GTTTAGGACCTGCAATGGTCTACAGTTGCTACAGAGGACTTTGGATCTACATAGTTTCTC 912
Query 830 CAACTCTTGGTGCCA-TTGCGGGTGCATGGGTTTATAACACGGTTAGATATACCGATAAA 888
||| | ||||||| | || ||||||| ||||||||||||| |||| ||||||| |||||
Sbjct 913 CAATTGTTGGTGC-AGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACTGATAAG 971
Query 889 CCATTGCGAGAAATAACTAAAAGTGGTTCGTTTTTAAAGACCGTGCGAATCGGTAGCTCT 948
||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||
Sbjct 972 CCATTACGAGAAATAACTAAAAGCGGTTCTTTTTTAAAGACAGTGCGAAACGGTAGCTCT 1031
Query 949 TGATAAAAGAAAAGAAAA 966
| ||| | |||||||||
Sbjct 1032 CGTTAAGA-AAAAGAAAA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5