BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492955
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19010.1 | Symbols: | AMP-dependent synthetase and ligase f... 2942 0.0
> AT4G19010.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr4:10411490-10414249 REVERSE LENGTH=1954
Length=1954
Score = 2942 bits (1593), Expect = 0.0
Identities = 1838/1954 (94%), Gaps = 26/1954 (1%)
Strand=Plus/Plus
Query 30 TCTCTCTAATGGCGGCGACGCATCTTCACATATCACCAAATGATAAAACACAAACGTCTC 89
||||||||||||||||||| |||||||||||| | |||||| |||||| ||||||||||
Sbjct 21 TCTCTCTAATGGCGGCGACACATCTTCACATACCGCCAAATCCTAAAACCCAAACGTCTC 80
Query 90 ACCAAAACCCTCCCTTTTGGTTCTCTCCTAAAACAGGAATCTACTCCAGCAAATTCCCCT 149
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 81 ACCAAAACCCTCCCTTTTGGTTCTCTTCTAAAACAGGAATCTACACCAGCAAATTCCCTT 140
Query 150 CCGTCCACCTCCCCGTCGACCCAAATCTCGACGCCGTCTCCGCCCTTTTCTCTCACAGAC 209
|| | |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 141 CCCTACACCTCCCCGTCGACCCAAATCTCGACGCCGTCTCCGCTCTTTTCTCACACAAAC 200
Query 210 ACGGCGGCGATGCCGCGCTCGTCGATTCCTTAACCGGGTTTTCGATATCTCACACTGAGC 269
|| ||||||| | |||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 201 ACCACGGCGATACAGCGCTCATCGATTCCTTAACCGGGTTCTCAATATCTCACACTGAGC 260
Query 270 TACAGATTATGGTTCAATCAATGGCGGCTGGGATTTATCACGTTTTGGGTGTTCGTCAAG 329
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 261 TACAGATTATGGTTCAATCAATGGCGGCTGGGATCTATCACGTTTTAGGTGTTCGTCAAG 320
Query 330 GTGACGTTGTATCACTCGTGTTGCCTAATTCCGTCTATTTTCCGATGATTTTCCTCTCGT 389
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 321 GTGACGTTGTATCACTCGTCTTGCCTAATTCCGTCTATTTTCCGATGATTTTCCTCTCTT 380
Query 390 TGATTTCGCTTGGTGCTATTGTTACTACCATGAATCCTTCGAGTAGTTTGGGAGAGATTA 449
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 381 TGATCTCGCTTGGTGCTATTGTTACTACCATGAATCCTTCGAGTAGTTTAGGAGAGATTA 440
Query 450 AGAAGCAAGTGAGTGAGTGTAATGTTGGTTTAGCGTTTACTTCTGCTGAAAACGTTGACA 509
|||||||||| |||||||||| |||||| ||||| ||||||||| ||||||||||||| |
Sbjct 441 AGAAGCAAGTTAGTGAGTGTAGTGTTGGATTAGCTTTTACTTCTACTGAAAACGTTGAGA 500
Query 510 AGTTGAGTTCTTTGGAGGTTAGGGTGATTA-TAGTACCTGAAAGTTACGATTTTGATTCG 568
|| |||||||||||| |||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct 501 AGCTGAGTTCTTTGGGGGTTAGTGTGATTAGT-GTATCTGAAAGTTACGATTTTGATTCG 559
Query 569 ATTCGTATCGAAAACCCGAAGTTTTACGT-CATTATGAAAGAAAGTTTCGGATTTGTACC 627
||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||
Sbjct 560 ATTCGTATCGAAAACCCGAAGTTTTAC-TCCATTATGAAAGAAAGTTTTGGGTTTGTACC 618
Query 628 AAAACCGTCGATTAAGCAGGACGATGTAGCTGCAATTATGTATTCGTCTGGGACAACTGG 687
|||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 619 AAAACCGTTGATTAAGCAAGACGATGTAGCTGCAATTATGTATTCATCTGGAACAACTGG 678
Query 688 AGCTACTAAAGGAGTTTTGTTAACTCATAGGAATTTGATTGCATCAATGGAGCTTTTTGT 747
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 679 AGCTAGTAAAGGAGTTTTGTTAACTCATAGGAATTTGATAGCATCAATGGAGCTTTTTGT 738
Query 748 GAGGTTTGAAGCTTCGCAATACGAATATCCGGGATTGAGTAATGTTTATCTGGCAGCTTT 807
||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 739 GAGGTTTGAAGCTTCTCAGTACGAATATCCGGGATCGAGTAATGTTTATCTAGCAGCTTT 798
Query 808 GCCTTTGTGTCATATCTACGGGTTATCACTCTTTGTGATGGGATTGTTGTCTCTGGGATC 867
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GCCTTTGTGCCATATCTACGGGTTATCACTCTTTGTGATGGGATTGTTGTCTCTGGGATC 858
Query 868 AACCATTGTTGTTATGAGGAGGTTCGATGCTTCTGATGTTATCAATGTAATCGAAAGGTT 927
||| ||||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||
Sbjct 859 AACTATTGTTGTTATGAAGAGGTTTGATGCTTCTGATGTTGTTAATGTAATTGAAAGGTT 918
Query 928 TAAGATCACTCATTTCCCGGTTGTTCCTCCTATGTTGATGGCATTGACAAAGAAGGCAAA 987
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 919 TAAGATCACTCATTTCCCGGTTGTTCCACCTATGTTGATGGCATTGACAAAGAAGGCAAA 978
Query 988 AGGAGTTTGTGGGGAAGTGTTTAAAAGCTTGAAGCAAGTTTCTTCTGGAGCAGCTCCTTT 1047
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 979 AGGAGTTTGTGGTGAAGTGTTTAAAAGTTTGAAGCAAGTTTCTTCTGGAGCAGCTCCTTT 1038
Query 1048 AAGTAGCAAGTTCATTGAAGATTTCCTTCAGACTCTTCCTCATGTTGATTTGATTCAGGG 1107
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1039 GAGTAGGAAGTTCATTGAAGATTTCCTTCAGACTCTTCCTCATGTCGATTTGATTCAGGG 1098
Query 1108 ATATGGAATGACTGAATCAACCGCAGTTGGAACACGGGGCTTCAACTCGGAAAAGCTTGG 1167
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1099 ATATGGAATGACTGAATCAACTGCAGTTGGAACACGGGGCTTCAACTCGGAAAAGCTTAG 1158
Query 1168 TAGGTATTCTTCGGTGGGACTACTTGCTCCTAATATGCAAGCCAAGGTAGTAGATTGGAG 1227
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1159 TAGGTATTCTTCTGTGGGACTACTGGCTCCTAATATGCAAGCCAAGGTAGTAGATTGGAG 1218
Query 1228 CTCTGGTTGTTTCCTACCACCAGGAAACCGGGGAGAGCTCTGGATACAAGGTCCCGGTGT 1287
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1219 CTCTGGTTCTTTCCTTCCACCAGGAAACCGAGGAGAGCTCTGGATACAAGGTCCCGGTGT 1278
Query 1288 CATGAAAGGGTACTTGAATAACCCAAAAGCAACTCAGATGAGTATAGTTGAAGATAGTTG 1347
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 CATGAAAGGATACTTGAATAACCCAAAAGCAACTCAGATGAGTATAGTTGAAGATAGTTG 1338
Query 1348 GCTACGTACTGGGGATATTGCTTATTTTGATGAAGATGGTTACTTGTTTATTGTTGACCG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GCTACGTACTGGGGATATTGCTTATTTTGATGAAGATGGTTACTTGTTTATTGTTGACCG 1398
Query 1408 TATTAAGGAGATTATTAAGTACAAAGGGTTTCAGATCGCACCAGCAGATTTGGAGGCTGT 1467
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1399 TATTAAGGAGATTATAAAGTACAAAGGCTTTCAGATCGCTCCAGCAGATTTGGAGGCTGT 1458
Query 1468 TCTTGTTTCACATCCTTTGATTATCGACGCTGCAGTAACAGCGGCCCCAAATGAAGAATG 1527
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1459 TCTTGTTTCACATCCCTTGATTATCGACGCTGCAGTAACAGCTGCCCCAAATGAAGAATG 1518
Query 1528 TGGAGAGATTCCGGTAGCATTCGTTGTCCGGAGACAAGAAACAACACTTTCAGAACAAGA 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1519 TGGAGAGATTCCGGTAGCATTCGTTGTCCGGAGACAAGAAACAACACTTTCAGAAGAAGA 1578
Query 1588 TGTAATAAGCTATGTAGCTGCTCAGGTTGCACCGTACAGGAAGGTGAGGAAAGTGGTGAT 1647
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1579 TGTAATAAGCTATGTAGCTTCTCAGGTTGCACCCTACAGGAAGGTGAGGAAAGTGGTGAT 1638
Query 1648 GGTTAGCTCTATACCAAAATCTCCAACTGGGAAGATATTGAGAAAGGAACTAAAGAGAAT 1707
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 GGTCAACTCTATACCAAAATCTCCAACTGGGAAGATATTGAGAAAGGAACTAAAGAGAAT 1698
Query 1708 TCTAACAAACTCTGTTTCTTCAAGACTATGATTCTTTCTTCATTTGTTTGGAAATAAGTA 1767
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1699 TCTTACAAACTCTGTTTCTTCAAGACTATGATTCTTTCTTCATTTGTTTGGTAATAAGTA 1758
Query 1768 GCACACAGAGAGATCCCACTAATATAGCCTTTATAATTCAATTAGTATTATTCATTGGTT 1827
||| |||||||||||| |||||||||||||| |||| |||||| ||||||||
Sbjct 1759 GCAGACAGAGAGATCC-ACTAATATAGCCTTCATAACTCAATT---------CATTGGTT 1808
Query 1828 TTGTAGCTTCAAAAGAAACTAAGCAGAGACATTCTTTGATTCTCAGTGAATAATAACAAT 1887
||||||| |||||||||| ||| |||| ||||||||||||||||||||||||| | || |
Sbjct 1809 TTGTAGCATCAAAAGAAA-TAAACAGACACATTCTTTGATTCTCAGTGAATAA-AGCA-T 1865
Query 1888 TGTAACCCAA-ACCCGGAAACAAAAATTCTTTCTGAGCCCTAAATTGTAATTT-AGCCAT 1945
|||||||||| || ||||||||||||||||||||||||| |||| ||||||| |||| |
Sbjct 1866 TGTAACCCAATAC--GGAAACAAAAATTCTTTCTGAGCCCAAAAT-GTAATTTTAGCC-T 1921
Query 1946 T-GTATTTTTTATTTACATAAAAGTCCTTTTAAT 1978
| ||||||| |||||||||||||||||||||||
Sbjct 1922 TAGTATTTT--ATTTACATAAAAGTCCTTTTAAT 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97991463840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5