BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492959
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation ... 1664 0.0
> AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation
factor (TFIIS) family protein | chr4:10405503-10407339 FORWARD
LENGTH=1221
Length=1221
Score = 1664 bits (901), Expect = 0.0
Identities = 1132/1239 (91%), Gaps = 33/1239 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGAGTTAGA-TGATTCTAACGATGACTGGGTGAAAGAACTTGAAGAAGTTCTCGA 59
|||||||||||||| | |||||||||||| ||||||||||||||| |||| ||
Sbjct 1 ATGCAAGAGTTAGACT-CTTCTAACGATGAATGGGTGAAAGAACTT---GAAG-----GA 51
Query 60 GGATAACGAGGAATCGAAATTCACAGGGAGGAGATTAGTTAAAAAGTCGATTTCTGTTCC 119
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 -GAGAACGAGGAATCGAAATTCACAGGGAGGAGATTAGTTAAAAAGTCGATTTCTGTTCC 110
Query 120 TGAATTGGTAGATGAAGTTGACGAAGATCTTAACGATTTTATGGAGCCTGAGGATGATTT 179
|||||||||||| |||||||| |||||||| ||||||||| || |||| |||||||||
Sbjct 111 TGAATTGGTAGACGAAGTTGAAGAAGATCTCGACGATTTTACAGAACCTGCGGATGATTT 170
Query 180 TAATGACAAAGTAGGgaagaagagacagaggaagaa-a--gatgagtctgttcttgagaa 236
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 171 TAATGACAAAGTAGGGAAGAAGAGACAGAGGAAGAAGAAAGATGAGTCTGGTCTTGAGAA 230
Query 237 gacgaagaagaa---gaagCAAAATTCCGCAGAGGTTCAAGAGATGTGGGATTCAATTAC 293
||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 231 GACAAAAAAGAACAAGAAGCAAAATTCCGAAGAGGTTCAAGAGATGTGGGATTCAATTAC 290
Query 294 GAACGACAAC-AACTCCCAGGATGGTGATAAAGTCGTAGTAAAACGTCCTAAGAAAAAAG 352
|||| ||| | ||||| ||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct 291 GAACAACA-CTAACTCACAGTATGGTGATAAGGTCGTAGTAAAACCTCCTAAGAAAAAAG 349
Query 353 ATGAGGATGCTGAGGAGATAGCCAAACTGTTCAGTCTTAGGAAAAAGAAGTGCAAGAGCA 412
|||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||
Sbjct 350 ATGAAGATGCTGAGGAGATAAAAAAACTGTTCAGTCTTAGGAAAAAGAAG---A-G--CA 403
Query 413 AGAGCGATAAAAACGCAATGGAGATTGCGATGCAAGTAGAACAAGTGATGGCGAATCTTG 472
|| ||||||||| | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 404 AGTGCGATAAAACCTCCATGGAGATTGGGATGCAAGTAGAACAAGTGATGGCGAATCTTG 463
Query 473 AAATCGCTGTAGAAGACGACGTAATTC-TAAACAGAGAAGGAAAACCCGCTATTAATAAG 531
||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 464 AAATCGCGGTAGAAGACGACGTAATTTGTAA-CAGAGAAGGAAAACCCGCCATTAATAAA 522
Query 532 CTCATGAAGTTACCTCTTCTCAATGAAACTCTCTCAAAGAAACCTCTTCAAGCTGAGTTC 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 523 CTCATGAAGTTACCTCTTCTCAATGAAACTCTCTCAAAGAAACCTCTTCAAGGTGAGTTC 582
Query 592 TTAGATCATGGAGTACTTAACCTTCTCAAGAATTGGCTCGAGCCGCTTCCTGATGGTAGC 651
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTAGACCATGGAGTACTTAACCTTCTCAAGAATTGGCTCGAGCCGCTTCCTGATGGTAGC 642
Query 652 TTACCAAATATAAACATCCGCACTGCCGTTTTGATGATTCTTAACGATTTTCGTATCGAT 711
|| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 643 TTGCCGAATATAAACATCCGCAGTGCCGTTTTGATGATTCTCAACGATTTTCGTATCGAT 702
Query 712 CTAGATCAAGACTCTAGAAGAGAACAGTTGATCAAGAGCGGTCTCGGGAAGGTCATAATG 771
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CTTGATCAAGACTCTAGAAGAGAACAGTTGATCAAGAGCGGTCTCGGGAAGGTCATAATG 762
Query 772 TTCTTATCAAAATCAGATGAAGAAACCACACCTAATAGGAGACTCGCTAATGATTTAATC 831
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 763 TTCTTATCAAAATCAGATGAAGAAACTACACCTAATAGGAGACTCGCTAATGATATAATC 822
Query 832 AACAAATGGGGCCGTATCATTTATAATAAGAGCACAAGATATGATAAGATGTTTAGTCAG 891
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 823 AACAAATGGGGCCGTATCATTTATAATAAGAGCACAAGATATGATAACATGTTTACTCAG 882
Query 892 GAGGAACTTGAAGAGCAACGGCAAATGCTATTAAGAAGACAGATCAAGACAGCTCCTAAG 951
||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct 883 GAGGAACTTGATGAGCAACGGCAAATACTATTAAGAAGACAGACCAAAACAGCTCCTAAG 942
Query 952 GTGTCTGAAACAAAAGCTCGAAACTTTGATACAGATCTTGACCTTTATGTGCTAGGACCT 1011
||||||| ||||| |||| || ||||| |||||||| |||||||||||| ||||||| ||
Sbjct 943 GTGTCTGGAACAAGAGCTAGAGACTTTAATACAGATATTGACCTTTATGAGCTAGGAACT 1002
Query 1012 TGGACAGGAAGAGCAAGAGCGAAAATACCAACAGCATTATCGATGGACTTTAGGATCCGT 1071
|||||||||||||||||||| |||||||||||| || | ||||||||||||| |||||||
Sbjct 1003 TGGACAGGAAGAGCAAGAGCAAAAATACCAACAACAATGTCGATGGACTTTAAGATCCGT 1062
Query 1072 CCTCCACCGAAGGTTGACA--AA----GAACCTGAAGCTTGTGCCAAGTGGGAAATGGAC 1125
|||||| |||||||||||| || ||| ||| ||||| |||||||| |||||||
Sbjct 1063 CCTCCATCGAAGGTTGACATTAACCAAGAAGAGGAACCTTGTTCCAAGTGGCAAATGGAA 1122
Query 1126 AAAAGACATAAAAACAAGCAGCGAAAGATCATCAGGAAAAAGGGCATGCAAGCATTCAAG 1185
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 1123 AAAAGACATAAAAACAAGCAGCAAAAGAACATCAGGAAAGGGGGCATGCAAGCATTGAAG 1182
Query 1186 CTTAGTGTAGACGGACGCACTATGCTCAAGTACTTGTAG 1224
|||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CTTAGTGTAGACGGACGCACTATGCTCAAGTACTTGTAG 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5