BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492961

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18980.1 | Symbols: AtS40-3 | AtS40-3 | chr4:10398918-103995...   774    0.0  


> AT4G18980.1 | Symbols: AtS40-3 | AtS40-3 | chr4:10398918-10399512 
FORWARD LENGTH=595
Length=595

 Score =  774 bits (419),  Expect = 0.0
 Identities = 524/570 (92%), Gaps = 25/570 (4%)
 Strand=Plus/Plus

Query  1    TTTTCCCTTACTTTCTTGGCAAAAACTTTACGATCTTTCAATGTCAGAAGAATTTCAAGA  60
            |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  16   TTTTTCCTTACTTTCTAGGCAAAAACTTTACGATCTTTCAATGTCAGAAGAATTTCAAGA  75

Query  61   ATCCGAGGTTATTTTTTCCGATGAGTCTTTCACAAGGAAACATAACAAG---AGTCACAA  117
            ||| |||||||| ||||||||||||||||||||||||||| ||||||||   ||||||||
Sbjct  76   ATCTGAGGTTATATTTTCCGATGAGTCTTTCACAAGGAAAGATAACAAGATCAGTCACAA  135

Query  118  CAACGAAAACTACGAAAGAAAGTCGACGGAGAAGGAT-AAATATTCATCTCCGGTGAGAA  176
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct  136  CAACGAAAACTACGAAAGAAAGTCGACGGAGAAGGATAAAAT-TTCATCTCCGGTGAGAA  194

Query  177  TTCCGTCAAGAACTATTTTCCGGTGTACGGAAGATGTGGAGGAGGAGGGAGAAATGACAC  236
            ||||||||||||||| | |||||| ||| |  ||     | |||||||||||||||||||
Sbjct  195  TTCCGTCAAGAACTACTATCCGGTATAC-G--GA-----A-GAGGAGGGAGAAATGACAC  245

Query  237  CACCACATGTCATAATCGAGAAACGAAGAAAGGAGGCGCAAATGGCGTTTTCTTTTTGTA  296
            | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct  246  CGCCACATGTCATAATCGAAAAACGAAGAACGGAGGCGCAAATGGCGTTTTCTTTTTGTA  305

Query  297  CCCTTAAAGGAAGAGACTTGAGTCGACACCGTAACACCGTTCTTAGGATGACCGGTTTTT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  306  CCCTTAAAGGAAGAGACTTGAGTCGACACCGTAACACCGTTCTTAGGATGACCGGCTTTT  365

Query  357  TGGAAGTTTAGT-T-GATCCCAAAACAAAATGAGAACCGGTCAAGTTTAATTTGATCTAT  414
            |||||||||| | | |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  366  TGGAAGTTTAATATTGATCCCAAAATAAAATGAGAACCGGTCAAGTTTAGTTTGATCTAT  425

Query  415  TTTG-GTTCGGTTTACGTCG-TCTTTCTTCA---TTTGGATGTAAGATTTAGCTTTGAAA  469
            || | ||||||||||||||| | ||||||||   |||||||||  |||||||||||||||
Sbjct  426  TT-GAGTTCGGTTTACGTCGGT-TTTCTTCAAAATTTGGATGT--GATTTAGCTTTGAAA  481

Query  470  CGAACCAAGTAATGTATCATGTTTTACACGTATAACATGGCTTTGAAACGAACCAATGTA  529
            |||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  482  CGAACCAATTAGTGTATCATGTTTTACACGTATAACATAGCGTTGAAACGAACCAATGTA  541

Query  530  TCATGGTTCTTATTATTTGGTGAAGAAAAA  559
            ||| |||||||||| |||||||||||||||
Sbjct  542  TCACGGTTCTTATTGTTTGGTGAAGAAAAA  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26825034498


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5