BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492966
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18950.1 | Symbols: | Integrin-linked protein kinase family... 2880 0.0
> AT4G18950.1 | Symbols: | Integrin-linked protein kinase family
| chr4:10375364-10378390 FORWARD LENGTH=1962
Length=1962
Score = 2880 bits (1559), Expect = 0.0
Identities = 1713/1788 (96%), Gaps = 8/1788 (0%)
Strand=Plus/Plus
Query 1 TCCTTTTCGTCTCCGATGACTTTGTTACCGACCTGCTTAGTCTTCTCCATTACGGCATCA 60
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCCTTTTCCTCTCCGATGACTTTCTTACCGACCAGCTTAGTCTTCTCCATTACGGCATCA 60
Query 61 TTCACCTATAAATTTCGACACTGGGTTTTAATTCACATCTTC-TCCGGaa-aaaaaaaaa 118
||||||||||||||||| | ||||| |||||||| | | ||| | | ||| |||||| |
Sbjct 61 TTCACCTATAAATTTCGCCGCTGGG-TTTAATTCTC-TATTCATTCAGAACCAAAAAAGA 118
Query 119 aaaaaCcttttttgattct-ttttcgatttctttgttcaatttcttctCAGATTGTGTGA 177
| ||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 119 AGAAACC-TTTTTGATTCTCTTTGCGATTTCTTTGTTCAATCTCTTCTCAGATTGTGTGA 177
Query 178 ATCGGGTTT-AATCAAGGTTTTAGGGTCTGTGTTTTCAAAAGGGTACCAAAAAGTTTGAA 236
||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 178 ATCGGGTTTAAATCGGGGTTTTAGGGTCTCTGTTTTCAAAAGGGTACCAAAAAGTTTGGA 237
Query 237 GCTTTTCTATTGAAATTTTTGATTTTTCGTTGACCCACTCCGAGATTTTCGGATACAAAT 296
||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GCTTTACTGTAGAAAGATTTGATTTTTCGTTGACCCACTCCGAGATTTTCGGATACAAAT 297
Query 297 CAGGGTTTTAGGGTTTTTGTTGGAATGGAAGAGGATTATCTACCGCCGAGGTTTACGATT 356
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 298 CAGGGTTTTAGGGTTTTTGTTGGAATGGAAGAGGATTATCAACAGCCGAGGTTTACGATT 357
Query 357 GGTAGGCAATCGTCAATGGCGCCGGAGAAGATTCCGGAGCCGTCGATTCACTCGGAAGAA 416
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 358 GGTAGGCAATCATCAATGGCGCCGGAGAAGATTCCGGAGCCGTCGGTTCACTCAGAAGAA 417
Query 417 GAGGTGTTTGAGGATGGAGAAGAGATCGATGGTGGTGTGAGACTTATGTATTTGGCTAAT 476
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 GAGGTGTTTGAGGATGGAGAAGAGATCGATGGTGGTGTGAGACTAATGTATTTGGCTAAT 477
Query 477 GAAGGTGACATTGAAGGGATTAAGGAGCTTCTTGATTCAGGGATTGATGCTAATTACAGA 536
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 GAAGGTGACATTGAAGGGATTAAGGAGCTTATTGATTCAGGGATTGATGCTAATTACAGA 537
Query 537 GACATTGATGATCGGACTGCTCTACACGTGGCGGCTTGTCAAGGATTGAAAGATGTTGTT 596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 GACATTGATGATCGGACTGCTTTACACGTGGCGGCTTGTCAAGGATTGAAAGATGTTGTT 597
Query 597 GAGCTTCTTCTTGATCGGAAAGCTGAGGTTGATCCTAAAGATCGTTGGGGAAGCACTCCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGCTTCTTCTTGATCGGAAAGCTGAGGTTGATCCTAAAGATCGTTGGGGAAGCACTCCA 657
Query 657 TTTGCAGATGCGATATTTTACAAGAACATTGATGTAATCAAGATTCTTGAGCTACATGGT 716
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 658 TTTGCAGATGCGATATTTTACAAGAACATTGATGTTATCAAGATTCTTGAGATACATGGA 717
Query 717 GCTAAACATCCGATGGCTCCAATGCATGTCAAGACTGCTCGTGAAGTCCCTGAATATGAA 776
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 718 GCTAAACATCCGATGGCTCCAATGCACGTTAAGACTGCTCGTGAAGTCCCTGAGTATGAA 777
Query 777 ATCGGTCCTAGTGAGCTTGATTTCACTCAAAGCAAAGAGATATCAAAGGGAACTTACTGT 836
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 ATAAATCCTAGTGAGCTTGATTTCACTCAAAGCAAAGAGATAACAAAGGGAACTTACTGT 837
Query 837 ATGGCAATGTGGCGTGGTATTCAAGTTGCGGTGAAAAAGCTCGATGATGAAGTTTTGAGC 896
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 ATGGCAATGTGGCGTGGTATTCAAGTTGCGGTGAAAAAGCTGGATGATGAAGTTTTGAGC 897
Query 897 GATGACGATCAAGTGAGGAAATTCCACGATGAGCTTGCATTGCTCCAAAGGCTCAGGCAT 956
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 898 GATGACGATCAAGTGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCAT 957
Query 957 CCAAACATTGTGCAGTTTCTTGGTGCTGTAACTCAAAGTAATCCAATGATGATTGTGACT 1016
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 958 CCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACT 1017
Query 1017 GAATATTTGCCCAGGGGGGATTTGCGTGAATTGCTCAAACGAAAAGGACAATTGAAACCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAATATTTGCCCAGGGGGGATTTGCGTGAATTGCTCAAACGAAAAGGACAATTGAAACCA 1077
Query 1077 GCTACTGCTGTTAGATATGCCCTTGATATTGCAAGGGGAATGAGCTATCTTCATGAGATC 1136
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 GCTACTGCTGTTAGATATGCCCTTGATATTGCTAGGGGAATGAGCTATCTTCATGAGATC 1137
Query 1137 AAAGGAGACCCTATTATCCACCGCGACCTTGAACCTTCAAACATTTTGCGGGATGATTCA 1196
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1138 AAAGGAGACCCTATAATCCACCGCGATCTTGAACCTTCAAACATTCTGCGGGATGATTCA 1197
Query 1197 GGGCATCTGAAAGTTGCAGACTTTGGAGTAAGCAAGCTCGTAACTGTTAAAGAAGACAAG 1256
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1198 GGGCATCTGAAAGTTGCAGACTTTGGAGTAAGCAAGCTTGTTACTGTTAAAGAAGACAAG 1257
Query 1257 CCTTTCACATGTCAAGACATTTCTTGTCGATATATAGCTCCCGAGGTTTTCACTAGTGAA 1316
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CCTTTTACATGTCAAGACATTTCTTGTCGATATATAGCTCCCGAGGTTTTCACTAGTGAA 1317
Query 1317 GAGTACGATACAAAAGCTGATGTTTTCTCATTTGCATTAATCGTTCAAGAGATGATCGAA 1376
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1318 GAATACGATACAAAAGCTGATGTTTTCTCATTTGCATTGATCGTTCAGGAGATGATCGAA 1377
Query 1377 GGCCGAATGCCCTTTTCTGAAAAGGAAGACAGTGAAGCTTCTGAAGCTTATGCTGGCAAA 1436
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GGCCGAATGCCGTTTGCTGAAAAGGAAGACAGTGAAGCTTCTGAAGCTTATGCTGGCAAA 1437
Query 1437 CATCGGCCATTATTTAAAGCTCCATCAAAGCATTACCCACATGGTCTTAAAACGTTGATA 1496
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 CATCGGCCATTATTCAAAGCTCCATCAAAGAATTACCCACATGGTCTTAAAACGTTGATA 1497
Query 1497 GAAGAATGCTGGCATGAGAAACCTGCAAAGCGACCAACTTTCAGAGAGATCATTAAACGA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GAAGAATGCTGGCATGAGAAACCTGCAAAGCGACCAACTTTCAGAGAGATCATTAAACGA 1557
Query 1557 CTTGAGTCCATTCTTCACCACATGGGTCACAAGCGACAATGGAGGATGAGGCCATTGACA 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CTTGAGTCCATTCTTCACCACATGGGTCACAAGCGACAATGGAGGATGAGGCCATTGACA 1617
Query 1617 TGCTTTCAGAATTTCGAGCACAAGAAGAAACAGAACTGGGATTTGAGCAGCCATGACGGC 1676
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1618 TGCTTTCAGAATTTCGAGCACAAGAAGAAACATAATTGGGATTTGAGCAGCCATGACGGC 1677
Query 1677 TCATCATCCGGTTCACATTTGTGATTCTTTACCCGGTTAA-GAAACCATTCTTTTGTATT 1735
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1678 TCATCATCCGGTTCACATTTGTGATTCTTTAAACGGTTAAAGAAACCATTCTTTTGTATC 1737
Query 1736 CATTCCTTCCGGTTTAGTTTGGTTTTCCCCAAAGCAACCGAATTTGAC 1783
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1738 CATTCCTTCCGGTTTAGTTTGGGTTTCCCCAAAGCAACCGAATTTGAC 1785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88202357565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5