BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492967
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18930.1 | Symbols: | RNA ligase/cyclic nucleotide phosphod... 948 0.0
> AT4G18930.1 | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase
family protein | chr4:10370704-10372045 FORWARD
LENGTH=799
Length=799
Score = 948 bits (513), Expect = 0.0
Identities = 605/650 (93%), Gaps = 3/650 (0%)
Strand=Plus/Plus
Query 1 CGATCCATGGAGGAGGTGAAGAAGGACGTATACTCCGTGTGGGCATTACCGGATGAGGAA 60
||||||||||| |||||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct 88 CGATCCATGGAAGAGGTGAAGAAGGATGTATACTCGGTTTGGGCATTACCAGATGAGGAA 147
Query 61 TCGGAGCCGCGGTTCAGAAAGCTAATGGAAGCTCTGAGATCTGAATTCACTGGCCCAAGA 120
|||||||| || |||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 148 TCGGAGCCCCGATTCAAAAAGCTAATGGAAGCTTTGAGATCCGAATTCACTGGCCCAAGA 207
Query 121 TTCGATCCTCACGTCACCGTCGTTGGAGCCACTAATCTGACGGCCGACGAAGCCAAGAAG 180
|||| ||||||||||||||||| | | | || |||||||||| |||||||||||||||
Sbjct 208 TTCGTTCCTCACGTCACCGTCGCCGTATCTGCTTATCTGACGGCAGACGAAGCCAAGAAG 267
Query 181 ATGTTCGAATCAGCTTGCGACGGT-TTTAAGTCTTACACTGCCACCGTCGATCGCGTCTC 239
|||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||||||
Sbjct 268 ATGTTCGAATCAGCTTGCGACGGTCTTAAAG-CTTACACCGCCACCGTTGATCGCGTCTC 326
Query 240 CACGGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAATCCACCCCTGAGGTAAT 299
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 327 CACCGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAAACCACCCCTGAGGTAAT 386
Query 300 GAAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCAACTACCACACCTTACATGCC 359
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 387 GGAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCCACTACCACACCTTACATGCC 446
Query 360 GCATTTGAGCCTGCTTTACGCTGAGTTAACAGAGGAAGAGAAGAAGAAAGCGCAGGAGAA 419
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 447 GCATTTGAGCCTGCTTTACGCTGAGTTGACAGAGGAAGAGAAGAAGAATGCGCAGGAGAA 506
Query 420 AGCTTACACGCTCGATAGCAGCCTCGATGGCCTCAGTTTCCGGTTAAAACAACTCGCTCT 479
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||
Sbjct 507 AGCTTACACGCTCGATAGCAGCCTCGATGGACTCAGTTTCCGGTTAAACCGACTTGCTCT 566
Query 480 ATGCAAAACCGATACCGAAGACAAGACTCTAGAGTCCTGGGAGACGGTGGCTGTATGCAA 539
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 567 ATGCAAAACCGATACCGAGGACAAGACTCTAGAGACATGGGAGACAGTGGCTGTATGCAA 626
Query 540 TCTCAATCCTTAAGAGAGACAACAAGTTTGGTTCTGAATCTGTAACAAAAGATCATAATG 599
||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||
Sbjct 627 TCTCAATCCTTAAGAAAGTCAA-AACTTTGGTTCTGAATCTGTAACAAAAGATCATAATG 685
Query 600 AACTTGCTTTTGAATAATGTATCGTTTTCCCTAAGATTGAATAATAATGT 649
||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 686 AACTTGCTTTTGAATAATGTATCGTTTTCTCTAAAACTGAATAATAATGT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5