BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492967 Length=649 Score E Sequences producing significant alignments: (Bits) Value AT4G18930.1 | Symbols: | RNA ligase/cyclic nucleotide phosphod... 948 0.0 > AT4G18930.1 | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr4:10370704-10372045 FORWARD LENGTH=799 Length=799 Score = 948 bits (513), Expect = 0.0 Identities = 605/650 (93%), Gaps = 3/650 (0%) Strand=Plus/Plus Query 1 CGATCCATGGAGGAGGTGAAGAAGGACGTATACTCCGTGTGGGCATTACCGGATGAGGAA 60 ||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||| Sbjct 88 CGATCCATGGAAGAGGTGAAGAAGGATGTATACTCGGTTTGGGCATTACCAGATGAGGAA 147 Query 61 TCGGAGCCGCGGTTCAGAAAGCTAATGGAAGCTCTGAGATCTGAATTCACTGGCCCAAGA 120 |||||||| || |||| |||||||||||||||| ||||||| |||||||||||||||||| Sbjct 148 TCGGAGCCCCGATTCAAAAAGCTAATGGAAGCTTTGAGATCCGAATTCACTGGCCCAAGA 207 Query 121 TTCGATCCTCACGTCACCGTCGTTGGAGCCACTAATCTGACGGCCGACGAAGCCAAGAAG 180 |||| ||||||||||||||||| | | | || |||||||||| ||||||||||||||| Sbjct 208 TTCGTTCCTCACGTCACCGTCGCCGTATCTGCTTATCTGACGGCAGACGAAGCCAAGAAG 267 Query 181 ATGTTCGAATCAGCTTGCGACGGT-TTTAAGTCTTACACTGCCACCGTCGATCGCGTCTC 239 |||||||||||||||||||||||| || ||| ||||||| |||||||| ||||||||||| Sbjct 268 ATGTTCGAATCAGCTTGCGACGGTCTTAAAG-CTTACACCGCCACCGTTGATCGCGTCTC 326 Query 240 CACGGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAATCCACCCCTGAGGTAAT 299 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 327 CACCGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAAACCACCCCTGAGGTAAT 386 Query 300 GAAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCAACTACCACACCTTACATGCC 359 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 387 GGAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCCACTACCACACCTTACATGCC 446 Query 360 GCATTTGAGCCTGCTTTACGCTGAGTTAACAGAGGAAGAGAAGAAGAAAGCGCAGGAGAA 419 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 447 GCATTTGAGCCTGCTTTACGCTGAGTTGACAGAGGAAGAGAAGAAGAATGCGCAGGAGAA 506 Query 420 AGCTTACACGCTCGATAGCAGCCTCGATGGCCTCAGTTTCCGGTTAAAACAACTCGCTCT 479 |||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| Sbjct 507 AGCTTACACGCTCGATAGCAGCCTCGATGGACTCAGTTTCCGGTTAAACCGACTTGCTCT 566 Query 480 ATGCAAAACCGATACCGAAGACAAGACTCTAGAGTCCTGGGAGACGGTGGCTGTATGCAA 539 |||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| Sbjct 567 ATGCAAAACCGATACCGAGGACAAGACTCTAGAGACATGGGAGACAGTGGCTGTATGCAA 626 Query 540 TCTCAATCCTTAAGAGAGACAACAAGTTTGGTTCTGAATCTGTAACAAAAGATCATAATG 599 ||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||| Sbjct 627 TCTCAATCCTTAAGAAAGTCAA-AACTTTGGTTCTGAATCTGTAACAAAAGATCATAATG 685 Query 600 AACTTGCTTTTGAATAATGTATCGTTTTCCCTAAGATTGAATAATAATGT 649 ||||||||||||||||||||||||||||| |||| | ||||||||||||| Sbjct 686 AACTTGCTTTTGAATAATGTATCGTTTTCTCTAAAACTGAATAATAATGT 735 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31346107728 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5