BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492969
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18910.1 | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrin... 1410 0.0
AT4G19030.1 | Symbols: NLM1, NIP1;1, AT-NLM1, ATNLM1 | NOD26-li... 878 0.0
> AT4G18910.1 | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic
protein 1;2 | chr4:10366059-10368381 FORWARD LENGTH=1239
Length=1239
Score = 1410 bits (763), Expect = 0.0
Identities = 986/1086 (91%), Gaps = 46/1086 (4%)
Strand=Plus/Plus
Query 27 AAAAACAGTTATGGCGGAGATCTCGGGGAACGGCCATGGTGGCGATGCTAGAGACGGAGC 86
||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 143 AAATACAGTTATGGCGGAGATCTCGGGAAACGG---TGGT---GATGCTAGAGACGGAGC 196
Query 87 TGTTGTAGTGAATCTTAAGGAAGAAGACGAACATCAACAACAGA-AAGAAGCTATTCATA 145
||| || || ||||| ||||||||||||||||| |||||||| | || |||||||||
Sbjct 197 TGTGGTGGTCAATCTCAAGGAAGAAGACGAACAACAACAACA-ACAACAAGCTATTC--- 252
Query 146 ATCCTAAACCCATGAAGAAACAAGAGTCTCTCCTCTCAATCTCTGTCCCTTTCTTGCAAA 205
| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 253 A---TAAACCCTTGAAGAAACAAGACTCTCTCCTCTCTATCTCTGTCCCTTTCTTACAAA 309
Query 206 AGTTGATGGCGGAGGTTCTGGGAACGTACTTCTTGATATTCGCCGGTTGTGCAGCGGTGG 265
||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 310 AGTTGATGGCGGAGGTTTTGGGAACATACTTCTTGATATTCGCCGGTTGTGCCGCGGTGG 369
Query 266 CCGTGAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGAC 325
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CTGTAAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGAC 429
Query 326 TTACCGTCATGGTTCTTGTTTACTCTCTTGGCCACATCTCCGGTGCTCATTTTAATCCGG 385
||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 430 TTACCGTCATGGTCCTTGTTTACTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGG 489
Query 386 CCGTCACAATCGCATTCGCCTCTTGCGGTCGTTTCCCTCTTAAACAGGTTCCGGCTTATG 445
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 490 CCGTCACAATCGCATTCGCTTCTTGCGGCCGTTTCCCTCTTAAACAGGTTCCGGCTTATG 549
Query 446 TGATATCACAAGTGATCGGATCGACGCTTGCGGCGGCGACTTTACGTCTCTTGTTCGGAC 505
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 550 TGATATCACAAGTGATCGGATCAACGCTAGCGGCGGCGACTTTACGGCTCTTGTTCGGAC 609
Query 506 TTGATCAAGACGTTTGTAGTGGCAAACACGATGTGTTCGTCGGAACATTACCATCTGGAT 565
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 610 TTGATCAAGATGTTTGTAGTGGGAAACACGATGTGTTCGTCGGAACATTACCATCTGGAT 669
Query 566 CGGATTTGCAGTCGTTTGTGATTGAGTTTATCATTACTTTCTACCTTATGTTCGTCATTT 625
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 670 CGAATTTGCAGTCGTTTGTGATCGAGTTTATCATTACTTTCTACCTAATGTTCGTTATTT 729
Query 626 CCGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCCGGACTAGCAGTAGGATCAA 685
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 730 CTGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCTGGACTAGCAGTAGGATCAA 789
Query 686 CGGTGCTACTTAACGTGATAATTGCCGGACCGGTATCGGGAGCATCGATGAATCCAGGAC 745
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 790 CAGTGCTACTTAACGTGATAATTGCCGGGCCGGTATCGGGAGCATCGATGAATCCAGGAC 849
Query 746 GAAGTTTAGGACCTGCAATGGTTTATAGTTGCTACAGAGGACTTTGGATCTACATAGTCT 805
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 850 GAAGTTTAGGACCTGCAATGGTCTACAGTTGCTACAGAGGACTTTGGATCTACATAGTTT 909
Query 806 CTCCAATTGTTGGTGCAGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACCGATA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 910 CTCCAATTGTTGGTGCAGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACTGATA 969
Query 866 AACCATTACGAGAAATAACTAAGAGCGGTTCGTTTTTAAAGACCGTGCGAAACGGTAGCT 925
| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 970 AGCCATTACGAGAAATAACTAAAAGCGGTTCTTTTTTAAAGACAGTGCGAAACGGTAGCT 1029
Query 926 CTCGTTAAG-----------CA--A--AT-----ACTAGTCATCGGAGGTTAAGTTGTAT 965
||||||||| || | || ||||||||||||||||||||||||||
Sbjct 1030 CTCGTTAAGAAAAAGAAAAACATGACTATGTTGTACTAGTCATCGGAGGTTAAGTTGTAT 1089
Query 966 CACTAA-GAAGTAATTGGGGTATTTTGGTATTTAAGTGTTTTTAAATTTGAATTACCGTA 1024
|||||| ||||||| ||| ||||||| |||| ||||||||||||||||| ||||||| |
Sbjct 1090 CACTAAAGAAGTAACTGGAATATTTTG-TATTAAAGTGTTTTTAAATTTGGATTACCGCA 1148
Query 1025 AATGGATTAACAT--A-G-TATGTGACGAATATTATAAGGGAATTGATCTATAACGAGTT 1080
||||||| ||||| | | |||||||||||||| ||| | |||||||||||||||
Sbjct 1149 AATGGATAAACATTTATGGTATGTGACGAATATG-TAAC----T-GATCTATAACGAGTT 1202
Query 1081 TGACCA 1086
|| |||
Sbjct 1203 TGGCCA 1208
> AT4G19030.1 | Symbols: NLM1, NIP1;1, AT-NLM1, ATNLM1 | NOD26-like
major intrinsic protein 1 | chr4:10421525-10423487 REVERSE
LENGTH=1172
Length=1172
Score = 878 bits (475), Expect = 0.0
Identities = 769/910 (85%), Gaps = 23/910 (3%)
Strand=Plus/Plus
Query 35 TTATGGCGGAGATCTCGGGGAACGGCCATGGTGGCGATGCTAGAGACGGAGCT-GTTGTA 93
|||||||||| |||||||| ||||| | | |||| | || ||||| | || | || |
Sbjct 77 TTATGGCGGATATCTCGGGAAACGG-C-T-ATGGCAACGCCAGAGAAGAAG-TAGTAATG 132
Query 94 GTGAATCTTAAGGAAGAAGACGAACATCAACAACAGAAA--GAAG-CTATTCATAATCCT 150
|||||||| ||||| |||| ||||||||||| | ||||| |||| | |||||||| ||
Sbjct 133 GTGAATCTCAAGGATGAAGTCGAACATCAAC-A-AGAAATGGAAGAC-ATTCATAA-CCC 188
Query 151 AA-ACCCATGAAGAAACAAGAGTCTCTCCTCTCAATCTCTGTCCCTTTCTTGCAAAAGTT 209
|| |||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||
Sbjct 189 AAGACCCTTGAAGAAACAAGACTCTCTACTCTCAGTCTCTGTCCCTTTCTTACAAAAGTT 248
Query 210 GATGGCGGAGGTTCTGGGAACGTACTTCTTGATATTCGCCGGTTGTGCAGCGGTGGCCGT 269
||| |||||| |||| ||||| ||||| ||| ||||| ||||||||||| |||||| ||
Sbjct 249 GATCGCGGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGT 308
Query 270 GAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTAC 329
|||| ||| | ||||| | ||||||||||||||||||||| |||||||||||||| ||
Sbjct 309 AAACATGCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCTATCGTTTGGGGACTCAC 368
Query 330 CGTCATGGTTCTTGTTTACTCTCTTGGCCACATCTCCGGTGCTCATTTTAATCCGGCCGT 389
| | ||||| || ||||||||||||| |||||||| ||||||||| | |||||||||||
Sbjct 369 CATTATGGTCCTCATTTACTCTCTTGGTCACATCTCTGGTGCTCATATCAATCCGGCCGT 428
Query 390 CACAATCGCATTCGCCTCTTGCGGTCGTTTCCCTCTTAAACAGGTTCCGGCTTATGTGAT 449
|| || || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||
Sbjct 429 TACCATTGCCTTCGCCTCTTGTGGCCGTTTCCCTCTCAAACAGGTTCCAGCTTATGTCAT 488
Query 450 ATCACAAGTGATCGGATCGACGCTTGCGGCGGCGACTTTAC-GTCTCTTGTTCGGACTTG 508
|||||||||||| ||||| ||||| ||||| ||||| |||| || | |||||||||||||
Sbjct 489 ATCACAAGTGATAGGATCAACGCTCGCGGCTGCGACATTACGGT-TGTTGTTCGGACTTG 547
Query 509 ATCAAGACGTTTGTAGTGGCAAACACGATGTGTTCGTCGGAACATTACCATCT-GGATCG 567
|||| ||||||||||| || |||||||||||||| ||||| ||| |||| | |||||
Sbjct 548 ATCACGACGTTTGTAGCGGAAAACACGATGTGTTTATCGGATCATCACCA-GTGGGATCA 606
Query 568 GAT-TTGCAGTCGTTTGTGATTGAGTTTATCATTACTTTCTACCTTATGTTCGTCATTTC 626
||| || ||| ||||| ||| ||||||||| | |||||||| || |||||| |||||||
Sbjct 607 GATCTT-CAGGCGTTTACGATGGAGTTTATCGTCACTTTCTATCTAATGTTCATCATTTC 665
Query 627 CGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCCGGACTAGCAGTAGGATCAAC 686
|||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 666 TGGCGTTGCTACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAAC 725
Query 687 GGTGCTACTTAACGTGATAATTGCCGGACCGGTATCGGGAGCATCGATGAATCCAGGACG 746
|||||||||||||||| ||||||||| |||||||||| | || ||||||||||||||| |
Sbjct 726 GGTGCTACTTAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAG 785
Query 747 AAGTTTAGGACCTGCAATGGTTTATAGTTGCTACAGAGGACTTTGGATCTACATAGTCT- 805
|||||||||||||||| |||| ||| ||||||||| |||| ||||||| ||| |||| |
Sbjct 786 AAGTTTAGGACCTGCACTGGTCTATGGTTGCTACAAAGGAATTTGGATATACTTAGT-TG 844
Query 806 CTCCAATTGTTGGTGCAGTTT-CGGGTGCGTGGGTTTATAACATGGTTCGATATACCGAT 864
| |||| | ||||||| | || ||||||| ||||||||||||| ||| |||||||||||
Sbjct 845 CGCCAACTCTTGGTGC-GATTGCGGGTGCATGGGTTTATAACACAGTTAGATATACCGAT 903
Query 865 AAACCATTACGAGAAATAACTAAGAGCGGTTCGTTTTTAAAGACCGTGCGAAACGGTAGC 924
|||||||| |||||||| ||||| || ||||| ||| ||||||||||| ||| |||||||
Sbjct 904 AAACCATTGCGAGAAATCACTAAAAGTGGTTCATTTCTAAAGACCGTGAGAATCGGTAGC 963
Query 925 TCTCGTTAAG 934
|| | ||||
Sbjct 964 ACTTGATAAG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5