BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492970
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18905.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2519 0.0
AT4G18900.1 | Symbols: | Transducin/WD40 repeat-like superfami... 750 0.0
> AT4G18905.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:10359896-10363240 FORWARD LENGTH=1925
Length=1925
Score = 2519 bits (1364), Expect = 0.0
Identities = 1649/1776 (93%), Gaps = 61/1776 (3%)
Strand=Plus/Plus
Query 1 AAATCTTCAATTGTTAAACCCTAAACCTACGAAAGTCTTGACTTTGTTTGCTGCTCATAT 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 45 AAATCTTCAATTGTTAAACCCTAAACCTACAAAAGTCTTGACTTTGTTTGTTGCTCATCT 104
Query 61 TCG------T-TCTCGATTAATTTCGTCCCGAGCAAGTTAGGTCCCGTTTCAAAAC-ATG 112
||| | |||||||||| ||||| ||||| ||||||||||||||||| |||| |||
Sbjct 105 TCGTTCTTCTCTCTCGATTAAATTCGTTCCGAGAAAGTTAGGTCCCGTTTCTAAACAATG 164
Query 113 ATAACTGCAGTGTCATGGATACCAAAAGGGAATCTAAAAGCTGTTCCTGATGTTGCTGAG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ATAACTGCAGTGTCATGGATACCAAAAGGGAATCTAAAAGCTGTTCCTGATGTTGCTGAG 224
Query 173 CCTCCTTCAAAGGAAGAACTTAAAGAGCTCATTGAGAGTGGTGCTTTTGCCAG-AA-GT- 229
||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 225 CCTCCGTCAAAGGAAGAACTTAAAGAGCTCATTGAGAGTGGTGCTTTTGCAAGAAACGTG 284
Query 230 -AA--T-G--AC---GAT---GAAGAAGAGATTGAAGAGGATGGAGAAGAGATAAGTGAA 277
|| | | || ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 285 GAAGGTAGTAACGAGGATGAAGAAGAAGAGATTGAAGAAGATGGAGAAGAGATAAGTGAA 344
Query 278 GTTGATCATGCCAAGGCTGTAGCTGAAGCTTTTGGTAAATCTTCTAAAAGCAAGAG-TGC 336
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 345 GTTGATCATGCCAAGGCTGTAGCTGAAGCTTTGGGTAAATCTTCTAAAAGCAAG-GCTGT 403
Query 337 TTCTTCTTCAATGGAGGTTGATGAGGTAGCTCAAGGATTGAAAGAACTTGACATGGATAA 396
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 404 TTCTTCTTCAATGGAGGTTGATGAGGTTTCTCAAGGATTGAAAGAACTTGACATGGATAA 463
Query 397 TTATGATGAAGAGGATGACGGAATTGAACTTTTCAGTTCTGGAATGGGGGATCTTTATTA 456
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 464 TTATGATGAAGAGGATGATGAAATTGAACTTTTCAGTTCTGGAATGGGGGATCTTTATTA 523
Query 457 TCCAAGTAATGAGATGGATCCATATCTGAAGGATGTTGATGACGAGGATGATGAAGAGGA 516
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 524 TCCAAGTAATGAGATGGATCCATATCTGAAAGATGTTGATGATGAAGATGATGAAGAGGA 583
Query 517 TATTGATGATACGACAGTCAAGCCAACTGATTCAGTGATTATCTGCGCTAGGAATGAAGA 576
||||||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 584 TATTGATGACACGACAGTCAAGCCGACCGATTCGGTGATTATTTGTGCTAGGAATGAAGA 643
Query 577 TGATGTCAGCCATCTAGAGGTTTACGTATACGAGGAATCGTCTGGCTCTCCAAACATGTA 636
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 644 TGATGTTAGCCATCTAGAGGTTTATTTATACGAGGAATCGTCTGGCTCTCCAAACATGTA 703
Query 637 TGTTCATCATCACATAATTATACCGGAATTCCCATTGTGTACTGCATGGATTGATTGTCC 696
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 704 TGTTCATCATCACATAATTATACCAGAATTCCCATTGTGTACTGCATGGCTTGATTGTCC 763
Query 697 TCTTAAAGGAGGGGAAAAAGGGAATTTTGTAGCTATTGGTTCAAAGGAAT-CGCCGACAA 755
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 764 TCTTAAAGGAGGGGAAAAAGGGAATTTTGTAGCTATTGGTTCAAAGG-ATACACCGACAA 822
Query 756 TCGAGATATGGGATCTTGACGTTAGGGACGAGGTGCTACCTTGTATACAACTAGGAGGAA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TCGAGATATGGGATCTTGACGTTAGGGACGAGGTGCTACCTTGTATACAACTAGGAGGAA 882
Query 816 CAGAGGAGATGATAGTGAGTAAGAAAAAGAAGAATAAG-AA-AGATAA--GAT-T-TG-- 867
|||||||||||||||||||||||||||||||| ||| || ||| || | | | ||
Sbjct 883 TAGAGGAGATGATAGTGAGTAAGAAAAAGAAGAGCAAGAAACAGA-AACCGGTGTGTGCA 941
Query 868 TC-TA-T-GGC-A-----A--ACGTAC-AAAG-AAGGTAGCCATACTGATTCAGTACTTG 914
|| | | | | | | ||| | | | || || ||||||||| ||||||||||
Sbjct 942 TCAAACTCGTCTATCTCTAGTTCGT-CTATGGCAA-GTTCCCATACTGAGTCAGTACTTG 999
Query 915 GTCTTGCTTGGAACAAGGAGTTTCGGAACATACTTGCTAGTGCTAGTGCCGACAAAAAAG 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GTCTTGCTTGGAACAAGGAGTTTCGGAACATACTTGCTAGTGCTAGTGCCGACAAAAAAG 1059
Query 975 TTAAGGTCTGGGATGTGGCTACTGGAATATGTAAGATTACTATGGAGCATCACACAAAGG 1034
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1060 TTAAGGTCTGGGATGTGGCTACTGGGACGTGTAAGATTACTATGGAGCATCACACAAAGG 1119
Query 1035 AGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCGTTTG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCGTTTG 1179
Query 1095 ATCAAACTGTTGTCTTGAAAGACGGAAGACAACCTTCACACTCAGGTTTCAAATGGTCTG 1154
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1180 ATCAAACTGTTGTCATGAAAGACGGAAGACAACCTTCACACTCGGGTTTCAAATGGTCTG 1239
Query 1155 TCATGTCTGATGTCGAAAGCTTAGCCTGGGATCCTCATAGTGAACACTCCTTTGTGGTAA 1214
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1240 TCATGTCTGATGTCGAAAGCTTAGCCTGGGATCCTCATTGCGAACACTCCTTTGTGGTAA 1299
Query 1215 GTCTTGAAGATGGAACCGTGAAAGGTTTTGATATACGTGCTGCACAGTCAGGTTCAGATT 1274
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1300 GTCTTGAAGATGGAACCGTGAAGGGTTTTGATATACGTGCTGCACAGTCAGGTTCAGATT 1359
Query 1275 CTGATTTAAAACCAAGTTTCACTATCCAAGCACATGACCAAGACAAAGGAGTCTCCTCCA 1334
|||||||||| |||| || ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1360 CTGATTTAAACCCAACTTACACTATCCAAGCACATGCCCAAGACAGAGGAGTCTCCTCCA 1419
Query 1335 TCTCATACAACATTTCTTCACCCAATCTTTTGGCTACGGGGTCTATGGATAAAACGGTAA 1394
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1420 TCTCATACAACATTTCTACACCCAATCTTTTGGCTACGGGGTCTATGGATAAATCGGTAA 1479
Query 1395 AACTTTGGGATCTTTCAAACAATGAACCTTCATGCATTGCTACACACAAACCAAAAGCTG 1454
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1480 AGCTTTGGGATCTTTCAAACAATGAACCTTCATGCATTGCTACACACCAACCAAATGCTG 1539
Query 1455 GAGCTGTGTTTTCCATTTCCTTTGCGGTGGACAACCCTTTCTTGCTTGCTATCGGTGGCT 1514
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1540 GAGCTGTGTTTTCCATTTCCTTTGCGGTGGACAACCCTTTCTTGCTTGCTATTGGTGGCT 1599
Query 1515 CAAAGGGAGAGCTACATGTTTGGGATACACTGTTGGACGCTAATGTTGCTCGCAAATATG 1574
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1600 CAAAGGGAGAGCTACATGTTTGGGATACACTGTTGGATGCTAATGTCGCTCGCAAATATG 1659
Query 1575 GGAGCAATCGATCTTGAAAAGACCCCCCGCAAGGA-ACACTTGTCTCTTTGAAGCTGTGA 1633
|||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 1660 GGAGCAATAGATCTTGAAAAGACCC---GCAAGGATA-ACTTGTCTCTTTGAAGCTGTGA 1715
Query 1634 TGGTCGTTAGATTCGATCACACTCATGCCAAATTTTGCAG-TTTCTTTTCTTCTTTT-CT 1691
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 1716 TGGTTGTTAGATTCGATCACACTCATGCCAAATTTTGC-GCTTTCTTTTCTTCTTTTTCT 1774
Query 1692 TTAGGCTTGTTTTATCTC--ATATGATTATGGTTAT 1725
|||||||||||||||||| ||||||||||||||||
Sbjct 1775 TTAGGCTTGTTTTATCTCTCATATGATTATGGTTAT 1810
> AT4G18900.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:10356465-10359078 FORWARD LENGTH=1386
Length=1386
Score = 750 bits (406), Expect = 0.0
Identities = 604/695 (87%), Gaps = 32/695 (5%)
Strand=Plus/Plus
Query 877 AACGTACAAAGAAGGTAGCCATACT-GATTCAGTACTTGGTCTTGCTTGGAACAAGGAGT 935
||| || ||| |||||||||| ||| || ||||| ||||||||||||||||| |||||||
Sbjct 676 AAC-TATAAACAAGGTAGCCACACTAGA-TCAGTTCTTGGTCTTGCTTGGAATAAGGAGT 733
Query 936 TTCGGAACATACTTGCTAGTGCTAGTGCCGACAAAAAAGTTAAGGTCTGGGATGTGGCTA 995
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 734 TTCGGAATATACTTGCTAGTGCTAGTGCCGACAAAAAAGTTAAGGTATGGGATGTGGCTA 793
Query 996 CTGGAATATGTAAGATTACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGA 1055
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTGGAACGTGTAAGATTACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGA 853
Query 1056 ACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCGTTTGATCAAACTGTTGTCTTGAAAG 1115
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 854 ACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCCTTTGATCAAACTGTTGTATTGAAAG 913
Query 1116 ACGGAAGACAACCTTCACACTCAGGTTTCAAATGGTCTGTCATGTCTGATGTCGAAAGCT 1175
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 914 ACGGAAGACAACCTTCACACTCGGGTTTCAAATGGTCTGTCATGTCCGATGTTGAAAGCT 973
Query 1176 TAGCCTGGGATCCTCATAGTGAACACTCCTTTGTGGTAAGTCTTGAAGATGGAACCGTGA 1235
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 974 TAGCCTGGGATCCTCATAGTGAACACTCCTTTGTGGTAAGTCTCGAAGATGGAACTGTCA 1033
Query 1236 AAGGTTTTGATATACGTGCT-GCACAGTC-AGGTTCAGATTCTGATTTAAAACCAAGTTT 1293
| || |||||| ||||| | || | || | ||||| ||||| | ||| ||||| ||
Sbjct 1034 AGGGCTTTGATGTACGT-CAAGC-C--TCCAT-TTCAGCCTCTGAATCAAATCCAAGCTT 1088
Query 1294 CACTATCCAA-GCACATGACCAAGACAAAGGAGTCTCCT-CCATCTCATACAACATTTCT 1351
|||||| || | ||||||| ||| || | || || || ||||||||||||||||
Sbjct 1089 CACTATT-AATGGACATGACGAAG-CA--G----CTACTTCCGTCTCATACAACATTTCG 1140
Query 1352 TCACCCAATCTTTTGGCTACGGGGTCTATGGATAAAACGGTAAAACTTTGGGATCTTTCA 1411
|||| ||||||||||| ||||| |||| ||||| ||||||||| |||||||||||||||
Sbjct 1141 GCACCTAATCTTTTGGCAACGGGATCTAAGGATAGAACGGTAAAGCTTTGGGATCTTTCA 1200
Query 1412 AACAATGAACCTTCATGCATTGCTACACACAAACCAAAAGCTGGAG-CTGTGTT-TTCCA 1469
|||||||| ||||||||||||||||||||||| ||||| ||||||| || | || ||| |
Sbjct 1201 AACAATGAGCCTTCATGCATTGCTACACACAATCCAAATGCTGGAGGCT-TATTCTTC-A 1258
Query 1470 TTTCCTTTGCGGT--GGACAACCCTTTCTTGCTTGCTATCGGTGGC-TCAAAGGGAGAGC 1526
|| | ||| | | |||||| |||||||| || ||||| |||||| | || ||| |||
Sbjct 1259 TTGC-TTT-CTCTCCGGACAATCCTTTCTTACTCGCTATGGGTGGCGT-AATGGGGGAGT 1315
Query 1527 TACATGTTTGGGATACACTGTT-GGACGCTAATGT 1560
|| | ||||||||||||| || |||| |||||||
Sbjct 1316 TAAAACTTTGGGATACACT-TTCGGACACTAATGT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91967398440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5