BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492971
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18890.1 | Symbols: BEH3 | BES1/BZR1 homolog 3 | chr4:103526... 1790 0.0
> AT4G18890.1 | Symbols: BEH3 | BES1/BZR1 homolog 3 | chr4:10352622-10355555
FORWARD LENGTH=1303
Length=1303
Score = 1790 bits (969), Expect = 0.0
Identities = 1102/1162 (95%), Gaps = 26/1162 (2%)
Strand=Plus/Plus
Query 45 ttAGAAGAAGAGGAAGTTAAAACAGAGAAACGACGCCGtttttttttCTTCTCCAAATTC 104
||||||||||||| |||||||||||||| |||||| || | || || || |||||||||
Sbjct 84 TTAGAAGAAGAGGCAGTTAAAACAGAGAGACGACGTCG--TGTTATT-TT-TCCAAATTC 139
Query 105 CGGTGATCTGAAAATGACGTCGGGGACTAGAACGCCGACTTGGAAAGAGAGAGAGAACAA 164
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CGGTGATCTGAGAATGACGTCGGGGACTAGAACGCCGACTTGGAAAGAGAGAGAGAACAA 199
Query 165 CAAACGGCGAGAGCGGCGAAGACGCGCGATTGCGGCTAAGATCTTCGCAGGACTAAGGAT 224
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 200 CAAACGGCGAGAGCGGCGAAGACGAGCGATTGCGGCTAAGATCTTCGCAGGACTAAGGAT 259
Query 225 TCATGGAAACTTCAAGCTCCCTAAACACTGCGACAACAATGAAGTCCTCAAAGCTTTATG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCATGGAAACTTCAAGCTCCCTAAACACTGCGACAACAATGAAGTCCTCAAAGCTTTATG 319
Query 285 CAATGAAGCTGGCTGGACTGTAGAAGACGACGGAACTACTTACCGCAAGGGATGCAAACC 344
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CAATGAAGCTGGTTGGACTGTAGAAGACGACGGAACTACTTACCGCAAGGGATGCAAACC 379
Query 345 AATGGATCGAATGGAACTCATGAATGGTTCTACTTCAGCGAGTCCATGCTCATCGTATCA 404
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 AATGGATCGAATGGACCTCATGAATGGTTCTACTTCAGCTAGTCCATGCTCATCGTATCA 439
Query 405 ACATAGCCCTCGTGCTTCCTACAATCCAAGCCCTTCATCTTCATCATTCCCAAGTCCTAC 464
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 440 ACATAGCCCTCGTGCTTCCTACAATCCAAGCCCTTCGTCTTCATCATTCCCGAGTCCTAC 499
Query 465 AAACCCATTTGGTGATGCTAACTCACTAATCCCATGGCTCAAGAACCTCTCTTCAAACTC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AAACCCATTTGGTGATGCTAACTCACTAATCCCATGGCTCAAGAACCTCTCTTCAAACTC 559
Query 525 ACCTTCCAAGCTTCCCTTCTTCCATGGGAATTCGATAAGCGCTCCCGTGACTCCACCATT 584
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 560 ACCTTCCAAGCTTCCCTTCTTCCATGGAAATTCAATAAGCGCTCCCGTGACTCCGCCATT 619
Query 585 GGCTCGAAGCCCTACTCGTGATCAAGTAACCATCCCTGACTCTGGATGGCTCTCTGGAAT 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 620 GGCTCGAAGCCCTACTCGTGATCAAGTAACCATCCCTGACTCTGGATGGCTCTCAGGAAT 679
Query 645 GCAAACTCCACAGAGTGGACCTTCTTCTCCTACCTTCAGTTTAGTTTCAAGAAACCCGTT 704
||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 680 GCAAACTCCGCAGAGCGGACCGTCTTCTCCTACTTTCAGTTTAGTTTCAAGAAACCCGTT 739
Query 705 TTTCGACAAAGAGGCTTTTAAAATGGGAGATTGTAATTCACCAATGTGGACTCCTGGACA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTTCGACAAAGAGGCTTTTAAAATGGGAGATTGTAATTCACCAATGTGGACTCCTGGACA 799
Query 765 AAGTGGAAACTGCTCTCCAGCTATTCCTGCTGGTGTTGATCAAAACTCTGATGTGCCAAT 824
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 800 AAGTGGAAACTGCTCTCCAGCTATTCCTGCTGGTGTTGATCAGAACTCTGATGTGCCAAT 859
Query 825 GGCTGATGGAATGGCGGCTGAGTTTGCGTTTGGTTGTAACGCAATCGCTGCGATTGGAAT 884
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 860 GGCTGATGGAATGACGGCTGAGTTTGCGTTTGGTTGTAACGCAATGGCTGCGAATGGAAT 919
Query 885 GGTGAAGCCTTGGGAAGGAGAAAGAATACATGGAGAATGTGTTTCAGATGATTTAGAACT 944
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 920 GGTGAAGCCTTGGGAAGGAGAAAGGATACATGGAGAATGTGTTTCAGATGATTTAGAACT 979
Query 945 TACACTTGGAAACTCAAGAACCAGATGATCATTTCAGAGAAGAATCAAAGTCGTTTGCTA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TACACTTGGAAACTCAAGAACCAGATGATCATTTCAGAGAAGAATCAAAGTCGTTTGCTA 1039
Query 1005 TCATTAATTCTTCTTCTTTGTCTGtttttttttttCAGTGTGATGTTTAAAGGTGACT-- 1062
||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1040 TCATTAAGTCTTCTTTTTTGTCTGTCTTTTTTTTCCAGTGTGATGTTTAAAGGTGACTCA 1099
Query 1063 Gaggaaaagaaaa-agga--gaaag-gaaaggaaaaaaagaaCATTTTGAGCTCTGtttt 1118
|||||||| ||| || | ||||| |||| ||||||||||||||||||||||||||||
Sbjct 1100 GAGGAAAA-AAAGGAGAATAGAAAGAGAAAC-AAAAAAAGAACATTTTGAGCTCTGTTTT 1157
Query 1119 -ttttttttttt-CT----------GTTGGCTTTTGACTAAAGTTTGTAGGTAGAATCTA 1166
||||||||||| || |||||||||||||||||||| |||| |||||||||
Sbjct 1158 CTTTTTTTTTTTTCTTTTTTTTTTTGTTGGCTTTTGACTAAAGTT-GTAGTTAGAATCTA 1216
Query 1167 TTTTATATCTCGAAGCTT-TTT 1187
|||||||||| ||||||| |||
Sbjct 1217 TTTTATATCTTGAAGCTTCTTT 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5