BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492972
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18880.1 | Symbols: AT-HSFA4A, HSF A4A | heat shock transcri... 1958 0.0
> AT4G18880.1 | Symbols: AT-HSFA4A, HSF A4A | heat shock transcription
factor A4A | chr4:10347582-10349562 REVERSE LENGTH=1904
Length=1904
Score = 1958 bits (1060), Expect = 0.0
Identities = 1209/1281 (94%), Gaps = 10/1281 (1%)
Strand=Plus/Plus
Query 420 TTTTTAGAGATGGATGAGAGTAATCATGGAGGTTCATCAAGCTCACTCCCACCTTTCCTC 479
|||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 503 TTTTCAGAGATGGATGAGAATAATCATGGAGTTTCATCAAGCTCACTTCCACCTTTCCTC 562
Query 480 ACCAAAACATATGAGATGGTTGATGATTCTTCATCCGATTCAATTGTTTCGTGGAGTCAG 539
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 563 ACCAAAACATATGAGATGGTTGATGATTCTTCATCCGATTCTATCGTCTCTTGGAGTCAG 622
Query 540 AGCAATAAGAGTTTCATCGTTTGGAATCCGCCGGAGTTTTCTAGAGATCTTCTTCCGAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AGCAATAAGAGTTTCATCGTTTGGAATCCGCCGGAGTTTTCTAGAGATCTTCTTCCGAGA 682
Query 600 TTCTTCAAGCACAATAACTTCTCAAGCTTTATCCGTCAGCTTAACACATACGGTTTTAGA 659
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 683 TTCTTCAAGCACAATAACTTCTCTAGCTTTATCCGCCAGCTTAACACATATGGTTTTAGA 742
Query 660 AAAGCTGATCCTGAGCAATGGGAATTTGCGAATGATGATTTTGTGAGAGGTCAACCTCAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AAAGCTGATCCTGAGCAATGGGAATTTGCGAATGATGATTTTGTGAGAGGTCAACCTCAT 802
Query 720 CTTATGAAGAACATTCATAGACGCAAACCAGTTCATAGCCACTCTTTACCGAATCTTCAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTTATGAAGAACATTCATAGACGCAAACCAGTTCATAGCCACTCTTTACCGAATCTTCAA 862
Query 780 GCTCAGCAAAACCCGTTGACGGATTCAGAACGACTGAGAATGAATAATCAGATTGAGAGA 839
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 863 GCTCAGTTAAACCCGTTGACGGATTCAGAACGAGTGAGAATGAATAATCAGATTGAGAGA 922
Query 840 TTGACAAAAGAGAAAGAAGGGTTGCTTGAAGAGTTACAGAAACAAGACGAAGAACGAGAA 899
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 923 TTGACAAAAGAGAAAGAAGGATTGCTTGAAGAGTTACATAAACAAGACGAGGAACGAGAA 982
Query 900 GTGTTTGAGAGGCAAGTTAAAGAACTAAAAGAACGGTTACAACAAATGGAGAAACGTCAG 959
|||||||||| |||||| |||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 983 GTGTTTGAGATGCAAGTGAAAGAACTTAAAGAACGATTACAACACATGGAGAAGCGTCAG 1042
Query 960 AAAACAATGGTTTCGTTTGTTTCTCAAGTATTGGAAAAACCAGGGCTTGCTTTGAACCTC 1019
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1043 AAAACAATGGTTTCGTTTGTTTCTCAAGTATTGGAAAAGCCAGGGCTTGCTTTGAACCTA 1102
Query 1020 TCGCCGTGTGTTCCCGAAACAAACGAGAGGAAAAGAAGGTTCCCTAGGATCGGGTTCTTT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1103 TCGCCGTGTGTTCCCGAAACAAACGAGAGGAAAAGAAGGTTCCCTAGGATCGAGTTCTTT 1162
Query 1080 CCCGATGAACCGATGTTGGAAGATAACCAAACGTGTGTTGTTGTGAGAGAGGAAGGTTCT 1139
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 1163 CCCGATGAACCGATGTTGGAAGAGAACAAAACTTGTGTTGTTGTGAGAGAGGAAGGTTCT 1222
Query 1140 ACAAGCCCGTCTTCACACACAACAGAGCATCAAGTGGAACAGTTAGAGTCATCCATAG-G 1198
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 1223 ACAAGCCCTTCTTCACACACAAGAGAGCATCAAGTGGAACAGTTAGAGTCATCGATAGCG 1282
Query 1199 TATTTGGGAGAATCTTGTATCCGACTCTTGTGAGAGTATGTTACAATCAAGAAGCATGAT 1258
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1283 -ATTTGGGAGAATCTTGTATCGGATTCTTGTGAGAGTATGTTACAATCAAGAAGTATGAT 1341
Query 1259 GACACTTGATGTGGATGAATCATCTACTTGTCCACAAAGCCCTCCTCTTTCTTGCATACA 1318
||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 1342 GACACTTGATGTGGATGAATCATCTACTTTTCCAGAGAGCCCTCCTCTTTCTTGCATACA 1401
Query 1319 GCTAAGTATCGATACACGTCCCAAGTCTCCTCCTTCTCCGAGGATCATCGACATGAACTC 1378
| ||||| ||||| |||||| ||| |||||||||||||| ||||||||||| |||||||
Sbjct 1402 GTTAAGTGTCGATTCACGTCTCAAATCTCCTCCTTCTCCAAGGATCATCGATATGAACTG 1461
Query 1379 TGAGCCCGATTTTTCGAAAGAACAGAACACTGTTGCTGCTGCTCCTCCTCC---AGTAGC 1435
|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1462 TGAGCCCGATGGTTCGAAAGAACAGAACACTGTTGCTGCTCCTCCTCCTCCTCCAGTAGC 1521
Query 1436 AGGAGCGAATGATGTCTTCTGGCAGCAGTTTTTCTCAGAGAATCCTGGCTCAACCGAGCA 1495
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 AGGAGCGAATGATGGCTTCTGGCAGCAGTTTTTCTCAGAGAATCCTGGCTCAACCGAGCA 1581
Query 1496 ACGGGAAGTTCAATCAGAGAGGAAAGATGATAAAGATGAAGCC--A-TACGTAGTGAGAA 1552
|||||||||||||| |||||||||||| ||||||||| ||||| | |||||| ||||||
Sbjct 1582 ACGGGAAGTTCAATTAGAGAGGAAAGACGATAAAGATAAAGCCGGAGTACGTACTGAGAA 1641
Query 1553 ATGTTGGTGGGATTCGAGGAATGTAAATACAATTACAGAACAGCTTGGACATCTGACTTC 1612
|||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1642 ATGTTGGTGGAATTCGAGAAATGTTAATGCAATTACAGAACAGCTTGGACATCTGACTTC 1701
Query 1613 TTCAGAGAGAAGTTGATATGTCAAAGTTTAAATTA-TAGTCTGTTTTAGTTTCTTGTAAA 1671
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 1702 TTCAGAGAGAAGTTGATATGTCAAAGATTAAATTTCTAGTCTGTTTTAGTTACTTGTAAA 1761
Query 1672 ATAGGTTTTCTCAGTTT-ATT 1691
||||| ||||||||||| |||
Sbjct 1762 ATAGGGTTTCTCAGTTTTATT 1782
Score = 523 bits (283), Expect = 2e-147
Identities = 350/379 (92%), Gaps = 18/379 (5%)
Strand=Plus/Plus
Query 2 TTGAAATTCTCTTGTCTTCTGATT-AGATA-A-ATACCCAAGTCCAGAAGCTGTTTAGGT 58
|||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||
Sbjct 6 TTGAAATTCTCTTG---TCTGATTAAAATATATATACCCAAGTCCAGAAGCTGTTTAGGT 62
Query 59 TCGAGAAGCAGAGAGGGTTCGAGAAGCTAATAAAAGGTTTCTTCTTTTTGATTTTAATGC 118
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 63 TCGAGAAGCAGAGAGGGTTCGAGAAGCTAATAAG-GGTTTCTTCTTTTTGATTTTAATGC 121
Query 119 TAAAAGGGTTCTAGATTCGTTGAATTCTACAAGGGTTTTAGGGGTTCTTAGAAGCTTTTG 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 122 TAAAAGGGTTCTAGATTCGTTGAATTTTACAAGGGTTTTAGGGGTTCTTAGAAGCTTTTG 181
Query 179 TTTGATTGTCTTT-ATTTAGAAACAGTGGTGAGGTTTTT-GTCTCTCACTTTGTTCAAGT 236
|||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 182 CTTGATTGTCTTTTATTTAGAAACAGTGGTGAG-TTTTTAGTCTTTCACTTTGTTCAAGT 240
Query 237 TTGAAGCtttttttGGAGGGAATTTTGGGTTTCTGATTTTGAATCTTTGATCGAAACATA 296
| ||||||||||||||||||||||||||| |||||||||||| || || || | ||
Sbjct 241 TCGAAGCTTTTTTTGGAGGGAATTTTGGGCTTCTGATTTTGA-TC---GA---AA-CTTA 292
Query 297 GTGATAGTAAGTTCTTTGAGTCCTCCTTAACTCTAGTTTCTGTGTACTCAAGTTATTGAA 356
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 293 CTGATAGTAAGTTCTTTGAGTCCTCCTTAACTGTAGTTTCTGTGTACTGAAGTTATTGAA 352
Query 357 TTGAAAGTTTTTATCTTTT 375
|||||||||||||||||||
Sbjct 353 TTGAAAGTTTTTATCTTTT 371
Score = 152 bits (82), Expect = 1e-35
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1685 GTTTATTTATCACATGTATGATCTTTCACAGTTCATTGTAGCAGACTTCAATGGTAATGA 1744
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GTTTATTTATCACTTGTATGATCTTTCACAGTTCATTGTAGCAGACTTCAATGGTAATGA 1876
Query 1745 TAAGCTAGAGCTTATGGATATTATTCAT 1772
|||||||||||||||||||| |||||||
Sbjct 1877 TAAGCTAGAGCTTATGGATAGTATTCAT 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87650151570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5