BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492976
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18830.1 | Symbols: ATOFP5, OFP5 | ovate family protein 5 | ... 2176 0.0
> AT4G18830.1 | Symbols: ATOFP5, OFP5 | ovate family protein 5
| chr4:10337205-10338612 FORWARD LENGTH=1408
Length=1408
Score = 2176 bits (1178), Expect = 0.0
Identities = 1331/1402 (95%), Gaps = 22/1402 (2%)
Strand=Plus/Plus
Query 1 GTTATTTAGGCTAAAAGTGGTCACAGGATTCTTCAGGCGGGTTTGGTTC-TTTTTTCAAA 59
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GTTATTTAGGCAAAAAGTGGTCACAGGATTCTTCAGGCGGGTTTGGTTCTTTTTTTCAAA 60
Query 60 CTGCAACTAGCTTTTACCCGTTAAG---ACATCTTCATCTCCCTCATATTAAACACAACG 116
|| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 CTACAACTAGCTTTTACCCGTTAAGACAACATCTTCATCTCCCTCCTATTAAACACAACG 120
Query 117 ACCTAACTATATTACAGCAGTAAGCTCTAGATACATATCCCTTCA-TTTTTATACATCtt 175
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ACCTAACCATATTACAGCAGTAAGCTCTAGATACATATCCCTTCATTTTTTATACATC-- 178
Query 176 tttttCATAGTCTAGCCTaaaaaaaCACCCGGTAAACTAAGAAAGCACAAAACTTTTTCA 235
||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 179 -TTTTCATAGTCTAGCCT--AAGAA-ACCCGGTAAACTAAGAAAGCACAAAACTTCTTCA 234
Query 236 GATT-TTGGAATGATGAGATGGGGAAGAAAGAAACCTGTttcttcttcttcttcttcttc 294
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 235 GATTCTTGGAATGATGAGATGGGGAAGAAAGAAACCTG-----T-TTCTTCTTCTTCTTC 288
Query 295 ttcCGGGTTGTCTCGTGCTCTTCCTGTTTCTTGGTTTTCAAAGTTAAGTGGTTCTTCTGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTCCGGGTTGTCTCGTGCTCTTCCTGTTTCTTGGTTTTCAAAGTTAAGTGGTTCTTCTGA 348
Query 355 CTTGAAACCTGTAAAAGAGAAGAAGCAAGATGAAAAAGCTAGCCAGAACATGTCTGCAAA 414
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 349 CTTGAAACCTGCAAAAGAGAAGAAGCAAGATGAAAAAGCTAGCCAGAACATATCTGTAAA 408
Query 415 AACTTCCTTGAGTTCTACTAAACATCGAAGTGATATTCATGAGAACAGCAAAAGGTTTCA 474
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 409 AACTTCCTTGAGTTCTACTACACGTCGAAGTGATATTCATGAGAACAGCAAAAGGTTTCA 468
Query 475 AAGAGTATCAGTAGAAAAGGAGAACGCTACAACAAGATCAGCAGATAAAGAGTCAAATGA 534
||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 469 AAGAGTATCAGTAGAAAAGGAGAACTCTGCAACAAGATCAGCAGATAAAGAGTCGAATGA 528
Query 535 GAAGTTTGAAGAGATAATGAGCAGTGTGAGGAAGAAAGTAAGAGATTTCCAAAAAGAGAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAAGTTTGAAGAGATAATGAGCAGTGTGAGGAAGAAAGTAAGAGATTTCCAAAAAGAGAC 588
Query 595 ATGTGGTTTTCTGGAAGTGGAGGCAATGGATAGAGAGAAAGGAACTGTGATCATGACGCC 654
|||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 589 ATGTGGTTTTCTGGAAGTGGAGGCAATGGATAGAGACAACGGAACTGTGATCCTGACGCC 648
Query 655 AAGAATTCAGGTGAACAGAGATAAGCAGAGATGTGAGAGACGTGACCAAAGGCTTCTCGA 714
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 649 AAGAATTCAGGTGAACAGAGATAAACAGAGATGTGAGAGACGTGACCAAAGGCTTCTTGA 708
Query 715 ACAAAAGCCAAAGAGATCAGAACAAAATGCAGATGTCAAGGTGAAAAAACCAGCGAGAAG 774
||||||||||||||||||||||||| | || | |||||||||||||||||||| |||||
Sbjct 709 ACAAAAGCCAAAGAGATCAGAACAAGACGCGGGGGTCAAGGTGAAAAAACCAGCTAGAAG 768
Query 775 GACAGGTACAGGAAGTTACAGTAGAGAGGATTCCGTGAATCTTGGTCATACTGTAACAAA 834
||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||
Sbjct 769 GACAGGTACAGGAGGTTACAGTAGAGAAGATTCCGTGATTCTTGGTCATACCATAACAAA 828
Query 835 ACCTGCTCATCAGTGTCAAAAGCTCAAGGAAGTCAAACTAAGAGAAGTGAAGCTGAAGGC 894
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ACCGGCTCATCAGTGGGAAAAGCTCAAGGAAGTCAAACTAAGAGAAGTGAAGCTGAAGGC 888
Query 895 TGACCAACAGAGGAAATCTCTGTACCTAAAAAGGGAGCTAAACAGATTAGGAACAAAAGA 954
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 889 TGACCAACAGAGGAAATCTCTGTACCTAAAAAGGGAGCTAAACAGAATAGGAACAAAAGA 948
Query 955 AAACAACAAGGTTAGAGTTTTTTCACCAAGAGCATCTGAAAAATGTAGAGTTAAAGCTAT 1014
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 949 AAACAACAAAGTTAGAGTTTTTTCACCAAGAGCATCTGAAAAATGCAGAGTTAAAGCTAT 1008
Query 1015 TGAAGACTTGAAGAAGGCTAAACTGAGAGCACGGGAGCACGAGCTTCTGATAGAAACAGC 1074
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGAAGACTTGAAAAAGGCCAAACAGAGAGCACGGGAGCACGAGCTTCTGATAGAAACAGC 1068
Query 1075 AGATGGAGGAATGGAGAACGAAAGCTTTGCAGTAGTTAAATGCTCGAGCGATCCTCAGAA 1134
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1069 AGATGGAGGAATGGAGAACGAAAGCTTTGCAGTAGTGAAATGCTCAAGTGATCCTCAGAA 1128
Query 1135 GGATTTTAGAGATTCAATGATTGAGATGATCATGGAGAATGGTATCAACCACCCTGAAGA 1194
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1129 GGATTTTAGAGATTCAATGATTGAGATGATTATGGAGAATGGTATCAACCATCCAGAAGA 1188
Query 1195 ACTCAAAGAGCTTCTGGTTTGTTATCTCAGACTCAATACAGATGAATATCATGACATGAT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ACTCAAAGAGCTTCTGGTTTGTTATCTCAGACTCAATACAGATGAATATCATGACATGAT 1248
Query 1255 CATCAGTGTGTTCCAGCAGGTGCATAATGATTTTAATTTTCAGTAATTTTGGTGTAGAAT 1314
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1249 CATCAGTGTGTTCCAGCAGGTGCATAATGATTTTAATTTTCATTAATTTTGGTGTAGAAT 1308
Query 1315 AGTAATATATAGATTCATCACTATGATTTGTGGATAGTTTAAGCTTTCTACGATGTAACT 1374
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AGTAACATATAGATTCATCAGTATGATTTGTGGATAGTTTAAGCTTTCTACGATGTAACT 1368
Query 1375 AACTTCATGCTTCTTGGTTATA 1396
| ||||||||||||| |||
Sbjct 1369 ---T-CATGCTTCTTGGTAATA 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5