BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492979
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18800.1 | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d | RA... 1517 0.0
AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1... 673 0.0
> AT4G18800.1 | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d |
RAB GTPase homolog A1D | chr4:10319862-10321551 REVERSE LENGTH=1151
Length=1151
Score = 1517 bits (821), Expect = 0.0
Identities = 974/1043 (93%), Gaps = 30/1043 (3%)
Strand=Plus/Plus
Query 1 AGCTAGAAAGACACCAGTCTTACCCTAACTTTATTCAAAGTCTCTGTCTTTCTGTAGAAA 60
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1 AGCTAGAAAGACACCAGTCTTACCCTAACTTTTTTCAAAGTCTGTGTCTTTCTGTAGAAA 60
Query 61 TCTG-GG-A-AAATAATTTGAATCTAAAGAG-A-AAA-AAG-AAG---AGAAGCAAAATC 110
|||| || | |||| |||||||||||||||| | ||| ||| ||| | ||||||||||
Sbjct 61 TCTGAGGAATAAAT-ATTTGAATCTAAAGAGAATAAAGAAGAAAGTAAAAAAGCAAAATC 119
Query 111 GAAG---TG---AA-GGTGTGGGATCAAAGAGCAATTTTCTTTTCTTTATTGGTAGAAAG 163
|||| || || | |||||||| |||||||||||| |||||||||| || |||||
Sbjct 120 GAAGTTTTGTTCAATTTTCTGGGATCATAGAGCAATTTTCGTTTCTTTATTCGTTGAAAG 179
Query 164 TGTGAAGC-TTTTTGATTTAGTGAGAAGTGTTAATGGCGGGTTACAGAGCTGATGATGAT 222
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TGTGAAGCTTTTTTGATTCAGTGAGAAGTGTTAATGGCGGGTTACAGAGCAGATGATGAT 239
Query 223 TACGATTACCTTTTCAAGGTGGTTCTGATCGGTGATTCAGGTGTTGGGAAGTCCAATTTG 282
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 TACGATTACCTATTCAAGGTGGTTCTGATCGGTGATTCAGGTGTTGGAAAGTCCAATTTG 299
Query 283 CTTTCTCGATTCACCAGGAACGAGTTTAGTCTCGAGTCTAAATCAACGATCGGGGTTGAG 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 CTTTCTCGATTCACCAGGAACGAGTTTAGTCTCGAGTCTAAATCAACGATCGGGGTCGAG 359
Query 343 TTCGCGACTCGTAGCTTGAATGTTAATGAAAAAGTTATCAAAGCCCAGATTTGGGATACT 402
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 360 TTCGCGACTCGTAGCTTGAATGTTAATGAAAAAGTCATCAAAGCCCAGATTTGGGACACT 419
Query 403 GCTGGTCAAGAAAGATACCGAGCAATCACTAGTGCTTACTACCGAGGAGCTGTTGGGGCG 462
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GCTGGTCAAGAAAGATACCGAGCAATCACTAGTGCTTACTATCGAGGAGCTGTTGGGGCG 479
Query 463 CTTCTTGTCTACGATGTAACCCGACACTCAACATTCGAAAACGTTGAGAGATGGCTAAGG 522
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTCTTGTTTACGACGTAACCCGACACTCAACATTCGAAAACGTTGAGAGATGGCTAAGG 539
Query 523 GAACTCCGTGACCATACTGACCCAAACATAGTTGTGATGCTTGTGGGAAACAAATCCGAT 582
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAACTCCGTGACCACACTGACCCAAACATAGTTGTGATGCTTGTGGGAAACAAATCCGAT 599
Query 583 CTTCGCCATCTTGTGGCAGTCCAAACCGAAGATGCAAAATCTTTTGCGGAGAATGAATCA 642
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 CTTCGCCATCTTGTAGCAGTCCAAACCGAAGATGCAAAATCTTTTGCAGAGAATGAATCA 659
Query 643 CTCTACTTCATGGAAACCTCAGCTCTTGAATCTACTAATGTTGAGAACGCGTTTTCTGAA 702
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 CTCTACTTCATGGAAACCTCAGCTCTTGAATCTACCAATGTTGAGAACGCGTTTTCTGAA 719
Query 703 GTACTCACTCAGATTTACCATGTTGTGAGCAAGAAAGCAATGGAGGCTGGTCAAGATTCG 762
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GTACTCACTCAGATTTACCATGTTGTGAGCAAGAAAGCAATGGAGGCTGGTGAAGATTCC 779
Query 763 GGTAATGTTCCTTCGAAAGGAGAAAAGATCGATGTTGATGTCTCCGCTGTGAAGAAAACC 822
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 780 GGTAATGTTCCTTCGAAAGGAGAGAAGATCGATGTTGATGTTTCCGCAGTGAAGAAAACT 839
Query 823 GGTTGCTGCTCCAACTAAAAGGTCTG-TGTCCTCAAAGCTGCAATCGGtttttaaatttt 881
||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||
Sbjct 840 GGTTGCTGCTCCAACTAAATGGTCTTATGTCCT-AAAGCTGAAATCGGTTTTTAAATTTT 898
Query 882 acattcaattttt-tttttgaagatgtttgcctttttttttttAGGAAA-CAATCTATGT 939
|||||||| |||| ||||||||||||||||| |||||||| |||||| ||| ||||||
Sbjct 899 ACATTCAAATTTTGTTTTTGAAGATGTTTGC-TTTTTTTT---AGGAAAACAAACTATGT 954
Query 940 TATGC-TTT-GTTTTGCTTGCTTGAAAATTGCTTAGCTTTGGTCTGATTCTGTACCGGTC 997
||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 955 TATGCCTTTTGATTTGCTTGTTTGAAAATTGCTTAGCTTTGGTCTGATTCTGTACCGGTT 1014
Query 998 AAGGGATTTTGTAATTCAATCCG 1020
|||||||||||||||| || |||
Sbjct 1015 AAGGGATTTTGTAATTTAA-CCG 1036
Score = 148 bits (80), Expect = 8e-35
Identities = 90/94 (96%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 1004 TTTTGTAATTCAATCCGCAAATATCTCTAAACCAATATTTATTGTGCTAATCCTTGAACA 1063
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TTTT-TAATTCAATCCGCAAATATCTCTAAACCAATATTTATTGTGCTAATCCTTGAACA 1113
Query 1064 CAAAAACTAATTTTTGTTATACCAATTTAGAAAA 1097
||| ||||||||||||||||||||||||||||
Sbjct 1114 CAA---CTAATTTTTGTTATACCAATTTAGAAAA 1144
> AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog
A1C | chr5:18559116-18560842 FORWARD LENGTH=1056
Length=1056
Score = 673 bits (364), Expect = 0.0
Identities = 562/657 (86%), Gaps = 16/657 (2%)
Strand=Plus/Plus
Query 195 AATGGCGGGTTACAGAGCTGATGATGATTACGATTACCTTTTCAAGGTGGTTCTGATCGG 254
|||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 202 AATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGATAGG 261
Query 255 TGATTCAGGTGTTGGG-AAGTCCAATTTGCTTTCTCGATTCACCAGGAACGAGTTTAGTC 313
||||||||||| |||| || |||||||||||||| |||||||| | ||||||||||||||
Sbjct 262 TGATTCAGGTG-TGGGCAAATCCAATTTGCTTTCACGATTCACGAAGAACGAGTTTAGTC 320
Query 314 TCGAGTCTAAATCAACGATCGGGGTTGAGTTCGCGACTCGTAGCTTGAATGTTAATGAAA 373
||||||| ||||| ||||||||||| |||||||||||||| || ||||||||| |||| |
Sbjct 321 TCGAGTCAAAATCCACGATCGGGGTCGAGTTCGCGACTCGGAGTTTGAATGTTGATGATA 380
Query 374 AAGTTATCAAAGCCCAGATTTGGGATACTGCTGGTCAAGAAAGATACCGAGCAATCACTA 433
|||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 381 AAGTCATCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCACTA 440
Query 434 GTGCTTACTACCGAGGAGCTGTTGGGGCGCTTCTTGTCTACGATGTAACCCGACACTCAA 493
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 441 GTGCGTATTACCGAGGAGCTGTTGGAGCGCTTCTTGTCTACGATGTAACCCGACACTCAA 500
Query 494 CATTCGAAAACGTTGAGAGATGGCT-AAGGGAACTCCGTGACCATACTGACCCAAACATA 552
|||| ||||||||||||| ||||| || | ||||| | |||| ||||| ||||||||
Sbjct 501 CATTTGAAAACGTTGAGACTTGGCTGAAAG-AACTCAGAAACCACACTGATCCAAACATT 559
Query 553 GTTGTGATGCTTGTGGGAAACAAATCCGATCTTCGCCATCTTGTGGCAGTCCAAACCGAA 612
|| || ||||| ||||| |||||||| || ||||||||||| ||||| || || || |||
Sbjct 560 GTAGTCATGCTCGTGGGCAACAAATCTGACCTTCGCCATCTCGTGGCTGTTCAGACTGAA 619
Query 613 GATGCAAAATCTTTTGCGGAGAATGAATCACTCTACTTCATGGAAACCTCAGCTCTTGAA 672
||||| || || || || ||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 620 GATGCTAAGTCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCGGCTCTCGAA 679
Query 673 TCTACTAATGTTGAGAACGCGTTTT-CTGAAGTACTCACTCAGATTTACCATGTTGTGAG 731
| || |||||||||||||| ||| | ||||| |||||||||||| |||| |||||||
Sbjct 680 GCCACCAATGTTGAGAACGC-TTTCGCCGAAGTCCTCACTCAGATTCACCACATTGTGAG 738
Query 732 CAAGAAAGCAATGGAGGCTG-GT-CAAGATTCGGGTAATGTTCCTTCGAAAGGAGAAAAG 789
|||||| || ||||| |||| | | | || || ||||||||| ||||||||||| |||
Sbjct 739 CAAGAAGGCGATGGAAGCTGCGAGCGA-ATCCGC-TAATGTTCCATCGAAAGGAGACAAG 796
Query 790 ATCGATGT---T---GATGTCTCCGCTGTGAAGAAAACCGGTTGCTGCTCCAACTAA 840
|||||| | | ||||| || |||||||||||| || |||||||| ||||||
Sbjct 797 ATCGATATCGGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5