BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492980
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP metal ion trans... 2501 0.0
> AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP metal ion transporter
family protein | chr4:10317785-10319660 REVERSE LENGTH=1593
Length=1593
Score = 2501 bits (1354), Expect = 0.0
Identities = 1518/1597 (95%), Gaps = 11/1597 (1%)
Strand=Plus/Plus
Query 1 ATGAC-GGATTCTACCGTTTCCCGCCAAGAAAATAGCCC-AAAACGACCTAACGACAGTA 58
||||| ||| || |||||||||||||||||||| ||||| || | |||| ||||||||||
Sbjct 1 ATGACGGGA-TCCACCGTTTCCCGCCAAGAAAACAGCCCTAAGA-GACCAAACGACAGTA 58
Query 59 ACGGCGAATTCAAACGTCTATTAGTTCCCGAAACCTCTCAGCC---GGAGGACGAGCGCC 115
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 59 ACGGCGAATTCAAACGTCTATTAGTTCCCGAAACCTCTCAGCCAGAGGAGGACGAGCTTC 118
Query 116 GCGAATCGCCACCGGAGAATCAGGTCCTGAACGTAGAAGAAGACAGAGACAAAACCTACG 175
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGAATCGCCACCGGAGAATCAGATCCTGAACGTAGAAGAAGACAGAGACAAAACCTACG 178
Query 176 ATTCGGTCCCGCCATTCTCATGGGCAAAGCTATGGAAATTCACCGGACCTGGATTTCTCA 235
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATTCAGTTCCGCCATTCTCATGGGCAAAGCTATGGAAATTCACCGGACCTGGATTTCTCA 238
Query 236 TGAGCATCGCG-TTCTTAGATCCAGGAAACATCGAAGGAGATTTACAAGCCGGAGCTGTG 294
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 TGAGCATCGCGTTTC-TAGATCCAGGAAATATCGAAGGAGATTTACAAGCCGGAGCTGTG 297
Query 295 GCTGGGTACTCTCTCCTATGGCTTCTTCTATGGGCGACGCTAATGGGACTTCTGATGCAG 354
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCTGGTTACTCTCTCCTATGGCTTCTTCTATGGGCGACGCTAATGGGACTTCTGATGCAG 357
Query 355 CTCCTCTCAGCTCGGATCGGTGTCGCGACGGGTCGGCATCTAGCGGAGATTTGCCGGAA- 413
|| ||||| ||||| ||||||||||| |||||||| ||| ||||||||||||| | |||
Sbjct 358 CTTCTCTCTGCTCGTATCGGTGTCGCCACGGGTCGACATTTAGCGGAGATTTGTC-GAAG 416
Query 414 TGAGTATCCATCGTGGGCGCGAATCTTGCTTTGGTTCATGGCGGAGGTTGCTTTGATCGG 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGAGTATCCTTCGTGGGCGCGAATCTTGCTTTGGTTCATGGCGGAGGTTGCTTTGATCGG 476
Query 474 AGCTGATATTCAAGAAGTCATCGGAAGCGCAATTGCTCTTCAGATTTTGACCCGAGGGTT 533
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 477 AGCTGATATTCAAGAAGTCATCGGAAGCGCGATCGCTCTTCAGATTTTGACTCGAGGGTT 536
Query 534 TTTACCGATTTGGGTTGGTGTTATCATCACATCGTTTGATTGCTTTTTGATTTCGTATCT 593
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 537 TTTACCTATTTGGGTTGGTGTTATCATCACATCATTTGATTGCTTCTTGATTTCGTATTT 596
Query 594 GGAGAAATGTGGAATGAGGAAATTAGAAGGTCTTTTCGCGGTTTTGATTGCGACAATGGC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGAGAAATGTGGAATGAGGAAATTAGAAGGTCTTTTCGCGGTTTTGATTGCGACAATGGC 656
Query 654 GCTTTCGTTTGCTTGGATGTTTAATGAAACTAAGCCAAGTGTTGAAGAACTATTCATAGG 713
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCTTTCGTTCGCTTGGATGTTTAATGAAACTAAGCCAAGTGTTGAAGAACTATTCATAGG 716
Query 714 TATTCTTGTTCCGAAGCTTGGATCAAAGACGATAAGAGAAGCTGTTGGAGTTGTGGGATG 773
|||| || ||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 TATTATTATTCCGAAACTCGGATCAAAGACGATTAGAGAAGCTGTTGGAGTTGTGGGATG 776
Query 774 TGTGATTACTCCACACAATGTGTTCTTGCATTCGGCATTAGTGCAGTCGAGGAAGACGGA 833
||| || || || |||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 777 TGTAATAACGCCTCACAATGTGTTCTTGCATTCAGCTTTAGTGCAGTCTAGGAAGACGGA 836
Query 834 TCCAAAGGAGATAAACAGAGTTCAGGAAGCTCTTAACTACTATACAATCGAATCATCAGC 893
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 837 TCCAAAGGAGATAAACAGAGTTCAAGAAGCTCTTAACTACTATACAATCGAATCGTCAGC 896
Query 894 CGCGCTTTTTGTTTCGTTCATGATCAATCTGTTTGTTACAGCGGTTTTCGCTAAAGGGTT 953
|||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct 897 CGCGCTTTTTGTTTCGTTCATGATCAATTTGTTTGTAACTGCGGTTTTCGCGAAAGGGTT 956
Query 954 TTATGGAACCAAACAAGCTGATAGTATAGGACTGGTTAACGCGGGGCATTACCTACAGGA 1013
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 957 TTATGGAACCAAACAAGCTGATAGTATAGGACTGGTTAACGCGGGATATTACCTACAAGA 1016
Query 1014 GAAATATGGCGGTGGGGTTTTCCCGATACTTTACATTTGGGGAATCGGTTTATTAGCTGC 1073
||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1017 GAAATATGGCGGTGGTGTTTTCCCGATACTATACATTTGGGGGATTGGTTTATTAGCTGC 1076
Query 1074 TGGACAAAGCAGTACTATAACCGGGACTTACGCTGGACAGTTTATAATGGAAGGGTTCTT 1133
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1077 TGGACAAAGCAGTACTATAACCGGGACTTATGCTGGACAGTTTATAATGGAAGGGTTCTT 1136
Query 1134 AGATCTTCAGATGGAACAATGGCTATCAGCTTTTATAACAAGAAGCTTTGCGATTGTACC 1193
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1137 AGATCTTCAAATGGAACAATGGCTATCAGCTTTTATAACGAGAAGCTTTGCTATTGTACC 1196
Query 1194 TACTATGTTTGTTGCTATTATGTTTAACACATCCGAGGGCTCACTCGATGTTTTAAACGA 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 TACTATGTTTGTTGCTATTATGTTTAACACATCCGAGGGCTCGCTCGATGTTTTAAACGA 1256
Query 1254 ATGGCTTAACATTCTTCAATCGATGCAGATTCCTTTCGCGGTTATTCCTCTTTTGACTAT 1313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATGGCTTAACATTCTTCAGTCGATGCAGATTCCTTTCGCGGTTATTCCTCTTTTGACTAT 1316
Query 1314 GGTTTCTAATGAACATATCATGGGTGTCTTCAAAATCGGACCTTCGCTCGAGAAGCTAGC 1373
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1317 GGTTTCTAATGAACATATCATGGGTGTCTTCAAGATCGGACCTTCGCTTGAGAAGCTAGC 1376
Query 1374 GTGGACTGTGGCGGTGTTTGTGATGATGATAAATGGGTACCTTCTTCTTGATTTCTTCAT 1433
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1377 TTGGACTGTGGCGGTGTTTGTGATGATGATAAATGGGTATCTTCTTCTAGATTTCTTCAT 1436
Query 1434 GGCTGAAGTGGAAGGGTTCCTTGTTGGGTTTCTGGTTTTTGCTGGAATAGTTGGATACAT 1493
|||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 1437 GGCTGAAGTGGAAGGGTTTCTTGTTGGGTTTCTGGTTTTTGGTGGAGTAGTTGGATACAT 1496
Query 1494 CAGTTTCATCATCTATCTTGTTTCTTATAGAAGCTCACAATCTTCTTCCTGGTCGAGTTT 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CAGTTTCATCATCTATCTTGTTTCTTATAGAAGCTCACAATCTTCTTCCTGGTCGAGTTT 1556
Query 1554 AGAAATGTCACAGAGAGTTGTTTCCACAGAGACGTAG 1590
|||||||||| ||||||||||||||||||||||||||
Sbjct 1557 AGAAATGTCAGAGAGAGTTGTTTCCACAGAGACGTAG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5