BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492981
Length=3204
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | cellulose s... 4743 0.0
AT4G18770.1 | Symbols: MYB98, AtMYB98 | myb domain protein 98 |... 438 1e-121
AT2G21770.1 | Symbols: CESA9, CESA09 | cellulose synthase A9 | ... 351 2e-95
> AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | cellulose
synthase family protein | chr4:10312624-10316790 REVERSE LENGTH=3251
Length=3251
Score = 4743 bits (2568), Expect = 0.0
Identities = 2889/3044 (95%), Gaps = 21/3044 (1%)
Strand=Plus/Plus
Query 1 TGTTACCCATCCAAATCTCAATCCCTAATTAGGGTTTC-TTTCTCTG-TTCTCCAAACAG 58
||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1 TGTTATCCATCCAAATCTCAATCCCTAATTAGGG-TTCATTTCTCTGTTTCTCCAAACAG 59
Query 59 GGGAATTCGAAGATGATGGAGTCTAGGTCTCCGATCTGCAACACTTGCGGTGAAGAGATT 118
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 60 GGGAATTCGAAGATGATGGAGTCTAGGTCTCCCATCTGCAACACTTGTGGTGAAGAGATT 119
Query 119 GGTGTAAAATCAAACGGAGAGTTCTTTGTGGCTTGTCATGAGTGTAGTTTCCCGATCTGC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTGTAAAATCAAACGGAGAGTTCTTTGTGGCTTGTCATGAGTGTAGTTTCCCGATCTGC 179
Query 179 AAAGCTTGTCTTGAGTATGAATTCAAAGAAGGTCGACGAATTTGCTTGCGTTGCGGCAAT 238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 AAAGCTTGTCTTGAGTATGAATTCAAAGAAGGTCGAAGAATTTGCTTGCGTTGCGGCAAT 239
Query 239 CCTTATGATGAGAATGTGTTTGATGATGTTGAGACAAAGACATCTAAAACTCAATCCATT 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCTTACGATGAGAATGTGTTTGATGATGTTGAGACAAAGACATCTAAAACTCAATCCATT 299
Query 299 GTTCCAACACACATCAATAACACTCCTCAGGTGGATTCTGGGATTCATGCTAGACATATA 358
||||||||||| | |||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 300 GTTCCAACACAGACCAATAACACTTCTCA---GGATTCAGGGATTCATGCTAGACATATA 356
Query 359 AGTACAGTCTCTACAATAGACAGTGATCTGAATGATGAATATGGGAATCCAATATGgaag 418
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 357 AGTACAGTCTCAACAATAGACAGTGAACTGAATGATGAATATGGCAATCCAATTTGGAAG 416
Query 419 aacagagttgagagct-----g----gaaagacaagaagagcaagaagaagaagaaagat 469
|||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 417 AACAGAGTGGAGAGCTGGAAAGACAAGAAAGACAAGAAGAGCAAGAAGAAGAAGAAAGAT 476
Query 470 tcaaaggcaacaaaagctgaagaaCATGATGG-TCGGATTCCTTCCCAACAACACATGGA 528
|||| ||||||||||||||| ||||||| || || ||||||| ||||||| ||||||||
Sbjct 477 CCAAAAGCAACAAAAGCTGAACAACATGA-GGCTCAGATTCCTACCCAACAGCACATGGA 535
Query 529 AGATATGCCATCGAACACAGAGGCTGGTGCTACAGATGTGCTTTCGGTTGTGATTCCTAT 588
||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 536 AGATACGCCACCGAACACAGAATCTGGTGCTACAGATGTGCTTTCGGTTGTGATTCCTAT 595
Query 589 CCCGAGGACAAAGATTACTTCATACAGGATCGTCATCATCATGCGGTTGATCATCTTGGC 648
||| |||||||| || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 596 CCCAAGGACAAAAATCACTTCATATAGGATTGTCATCATCATGCGGTTGATCATCTTGGC 655
Query 649 TCTGTTTTTCAACTACCGTATCACGCATCCTGTCGATAGTGCTTACGGTTTATGGCTAAC 708
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 656 TCTGTTTTTTAACTACCGTATCACGCATCCTGTCGATAGCGCTTACGGTTTATGGCTAAC 715
Query 709 TTCTGTGATATGTGAGATTTGGTTTGCTGTTTCTTGGGTGTTGGATCAGTTCCCTAAATG 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCTGTGATATGTGAGATTTGGTTTGCTGTTTCTTGGGTGTTGGATCAGTTCCCTAAATG 775
Query 769 GTCTCCTATTAACCGTGAAACTTACATCGATCGGTTATCCGCAAGATTCGAAAGAGAAGG 828
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 776 GTCTCCTATTAACCGAGAAACTTACATCGACCGGTTATCCGCAAGATTCGAAAGAGAAGG 835
Query 829 CGAGCAGTCACAGCTTGCAGCTGTAGATTTCTTTGTTAGTACAGTTGATCCGTTGAAGGA 888
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 836 CGAGCAATCACAGCTTGCAGCTGTAGATTTCTTTGTTAGTACGGTAGATCCATTAAAGGA 895
Query 889 GCCACCTTTGATCACTGCAAACACTGTTCTTTCGATCCTCGC-ATTAGATTATCCTGTGG 947
|||||||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||
Sbjct 896 GCCACCTTTGATAACTGCAAACACGGTTCTTTCGATCCTCGCGCTT-GATTATCCGGTGG 954
Query 948 ATAAAGTCTCTTGCTATGTATCTGATGATGGTGCGGCGATGCTTTCATTTGAGTCTTTGG 1007
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 955 ATAAAGTCTCTTGCTATGTATCTGATGATGGTGCTGCAATGCTTTCGTTTGAGTCTTTGG 1014
Query 1008 TTGAGACTGCTGATTTTGCTAGGAAATGGGTACCTTTCTGCAAGAAGTACTCAATCGAGC 1067
||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1015 TTGAGACAGCAGATTTTGCTAGGAAATGGGTACCTTTCTGCAAAAAGTACTCCATCGAGC 1074
Query 1068 CACGAGCTCCCGAGTTTTACTTCTCGCTTAAAATCGATTACTTGAGGGATAAAGTTCAAC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CACGAGCTCCCGAGTTTTACTTCTCGCTTAAAATCGATTACTTGAGGGATAAAGTTCAAC 1134
Query 1128 CTTCTTTTGTGAAAGAACGTAGAGCCATGAAAAGAGATTACGAGGAGTTCAAGATTAGAA 1187
|||||||||||||||||||||||||||||||||||||||| || ||||| || || ||||
Sbjct 1135 CTTCTTTTGTGAAAGAACGTAGAGCCATGAAAAGAGATTATGAAGAGTTTAAAATAAGAA 1194
Query 1188 TGAATGCTTTAGTCGCCAAGGCTCAAAAGACACCAGAAGAAGGATGGACAATGCAAGATG 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGAATGCTTTAGTCGCCAAGGCTCAAAAGACACCAGAAGAAGGATGGACAATGCAAGATG 1254
Query 1248 GAACCTCTTGGCCCGGAAACAACACTCGTGACCATCCCGGGATGATTCAGGTTTTTCTTG 1307
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GAACATCTTGGCCCGGGAACAACACTCGTGACCATCCCGGGATGATTCAGGTTTTTCTTG 1314
Query 1308 GATATAGCGGTGCTCGCGACATTGAAGGAAACGAACTTCCAAGATTAGTTTACGTCTCTA 1367
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1315 GATATAGCGGTGCTCGCGACATTGAAGGAAATGAACTTCCAAGATTAGTTTACGTCTCTA 1374
Query 1368 GAGAGAAGAGACCTGGCTATCAACATCACAAAAAGGCCGGGGCAGAGAATGCATTGGTGA 1427
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1375 GAGAGAAGAGACCTGGTTATCAGCATCACAAAAAGGCCGGGGCAGAGAACGCATTGGTGA 1434
Query 1428 GGGTGTCTGCGGTTTTAACGAATGCTCCATTCATTCTTAACCTTGATTGTGATCACTATG 1487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 GGGTGTCTGCGGTTTTAACGAATGCTCCATTCATTCTTAACCTTGATTGTGATCACTACG 1494
Query 1488 TCAACAATAGCAAAGCTGTGCGTGAAGCGATGTGCTTTTTAATGGATCCTGTTGTTGGTC 1547
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1495 TCAACAATAGCAAAGCCGTGCGTGAAGCAATGTGCTTTTTAATGGATCCTGTTGTTGGTC 1554
Query 1548 AAGACGTTTGCTTTGTTCAATTCCCACAGAGATTTGATGGAATCGACAAGAGTGATCGAT 1607
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGACGTTTGCTTTGTTCAGTTCCCACAGAGATTTGATGGAATCGACAAGAGTGATCGAT 1614
Query 1608 ATGCTAATCGCAACATAGTTTTCTTCGATGTTAATATGAGAGGACTTGATGGGATTCAAG 1667
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1615 ATGCTAACCGCAACATTGTTTTCTTCGATGTTAATATGAGAGGGCTTGATGGGATTCAAG 1674
Query 1668 GTCCAGTTTATGTTGGTACAGGAACTGTCTTTAGAAGACAAGCACTATACGGATATAGTC 1727
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1675 GTCCAGTTTATGTTGGTACAGGTACTGTCTTTAGAAGACAAGCACTTTACGGATACAGTC 1734
Query 1728 CACCTTCTAAACCGAGGATTTTACCGCAATCTTCTTCCTCGTCTTGTTGCTGTTTAACCA 1787
||||||| |||||||||||||||||||||||||| || ||||| ||||||||| ||||||
Sbjct 1735 CACCTTCAAAACCGAGGATTTTACCGCAATCTTCATCATCGTCGTGTTGCTGTCTAACCA 1794
Query 1788 AGAAGAAACAACCTCAAGATCCTTCCGAGATATACAAAGACGCAAAGCGAGAAGAACTTG 1847
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1795 AGAAGAAACAACCTCAAGATCCTTCCGAGATTTACAAAGATGCAAAGCGAGAAGAACTTG 1854
Query 1848 ATGCAGCGATCTTTAATCTTGGAGACCTAGACAACTACGATGAGTATGAAAGATCGATGC 1907
|||| || |||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1855 ATGCTGCAATCTTTAATCTTGGGGACCTAGACAACTACGATGAGTACGACAGATCGATGC 1914
Query 1908 TGATTTCACAAACAAGCTTTGAGAAAACGTTTGGTCTCTCCGCGGTTTTCATAGAGTCTA 1967
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1915 TGATTTCACAAACAAGCTTTGAGAAAACGTTTGGTCTCTCTACGGTTTTCATCGAGTCTA 1974
Query 1968 CTCTTATGGAGAATGGCGGTGTTCCTGACTCTGTAAACCCGTCAACGCTCATCAAAGAAG 2027
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1975 CTCTTATGGAGAATGGCGGTGTTCCCGACTCTGTAAACCCGTCAACGCTCATCAAAGAAG 2034
Query 2028 CTATTCATGTCATTAGCTGCGGATACGAAGAGAAAACCGAATGGGGAAAAGAAGTAGGAT 2087
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2035 CTATTCATGTCATTAGCTGTGGATACGAAGAGAAAACTGAATGGGGAAAAGAAATAGGAT 2094
Query 2088 GGATTTACGGGTCGATCACGGAAGACATTTTGACGGGTTTCAAGATGCATTGTCGTGGAT 2147
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 GGATTTACGGGTCGATCACCGAAGACATTTTGACGGGTTTCAAGATGCATTGTCGTGGAT 2154
Query 2148 GGAGGTCTATTTACTGTATGCCATTAAGACCGGCTTTTAAAGGATCTGCTCCAATCAATC 2207
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2155 GGAGGTCGATTTACTGTATGCCATTAAGACCAGCATTTAAAGGATCTGCTCCAATCAATC 2214
Query 2208 TATCAGATAGGCTTCACCAGGTTCTGCGTTGGGCTCTTGGTTCGGTCGAGATCTTCCTTA 2267
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2215 TATCAGATAGGCTTCACCAGGTTCTACGTTGGGCTCTTGGCTCGGTTGAGATCTTCCTTA 2274
Query 2268 GCCGGCATTGTCCTCTATGGTACGGCTGCAGTGGAGGCCGTCTCAAGTTGCTCCAGAGAT 2327
|||| ||||||||| | |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 2275 GCCGACATTGTCCTTTGTGGTACGGTTGCAGCGGAGGCCGCCTCAAGTTGCTCCAGAGAT 2334
Query 2328 TAGCTTATATCAACACTATTGTTTATCCC-TTCACTTCTTTGCCTCTTGTTGCTTACTGT 2386
|||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 2335 TAGCTTATATAAACACTATTGTCTA-CCCATTCACTTCTTTGCCTCTTGTTGCTTACTGT 2393
Query 2387 ACTCTTCCTGCTATCTGCCTTCTCACCGGCAAATTCATCATCCCAACGCTATCAAACCTA 2446
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2394 ACTCTTCCAGCTATTTGCCTTCTTACCGGCAAATTTATCATCCCAACGCTATCAAACCTA 2453
Query 2447 GCAAGCATGCTGTTTCTAGGTCTCTTCATATCAATCATCTTAACAAGTGCCCTCGAGCTT 2506
|||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 2454 GCAAGCATGCTGTTTCTAGGTCTCTTTATATCAATCATCTTAACGAGTGTCCTCGAGCTT 2513
Query 2507 CGATGGAGCGGAGTGAGCATCGAAGACTTATGGAGAAACGAACAGTTTTGGGTTATTGGA 2566
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 CGATGGAGCGGAGTCAGTATCGAAGACTTATGGAGAAACGAACAGTTTTGGGTTATTGGA 2573
Query 2567 GGCGTCTCAGCTCATCTCTTTGCCGTTTTCCAAGGATTCCTCAAAATGCTCGCTGGTCTC 2626
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 GGTGTCTCAGCTCATCTCTTTGCCGTTTTCCAAGGATTCCTCAAAATGCTCGCTGGTCTC 2633
Query 2627 GACACAAATTTCACAGTCACGTCGAAAACCGCAGACGATTTAGAATTCGGTGAGCTCTAC 2686
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 2634 GACACAAATTTCACAGTCACATCGAAAACCGCAGATGATTTAGAATTCGGTGAGCTTTAC 2693
Query 2687 ATCGTCAAATGGACAACTCTCTTGATCCCTCCGACATCACTTCTCATAATTAACTTGGTT 2746
|| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 2694 ATTGTCAAATGGACAACTCTCTTGATCCCTCCGACGTCACTTCTTATAATCAACTTGGTC 2753
Query 2747 GGAGTCGTTGCTGGATTCTCTGATGCTCTTAACAAAGGTTATGAAGCTTGGGGACCTTTG 2806
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2754 GGAGTTGTTGCTGGATTCTCTGACGCTCTTAACAAAGGTTATGAAGCTTGGGGACCTTTG 2813
Query 2807 TTTGGGAAAGTGTTTTTCGCCTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGT 2866
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 TTTGGGAAGGTATTTTTCGCCTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGT 2873
Query 2867 CTTATGGGAAGACAAAACAGAACACCCACCATTGTTATTCTCTGGTCTATCTTGCTTGCT 2926
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2874 CTTATGGGAAGACAAAACAGAACACCTACTATTGTTATTCTCTGGTCTATCTTGCTTGCT 2933
Query 2927 TCTGTGTTCTCACTTGTTTGGGTTCGTATCAATCCTTTCGTCTCCAAAACCGATACGACC 2986
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2934 TCTGTGTTTTCACTTGTTTGGGTTCGTATCAATCCTTTCGTCTCCAAAACCGATACGACT 2993
Query 2987 TCCCTTTCACAGAACTGTCTTTTGATCGATTGCTAAAAGAAGAT 3030
|||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 2994 TCCCTTTCTCTGAACTGTCTTTTGATCGATTGCTAAGAGAAGAT 3037
Score = 283 bits (153), Expect = 7e-75
Identities = 168/175 (96%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 3031 TTTTGGTTGTTTTATAAGTTTTCATATAGTTGCTTGAGCCACAAGTTAAGTAATGTTCTT 3090
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3075 TTTTGGTTGTTTTATAAATTTTCATATGGTTGCTTGAGCCACAAGTTAAGTAATGTTCTT 3134
Query 3091 ATTTTAGCAACAAGTCTTGGCGGATTCCGCAAGTTAGGTTTCTACTGTTTCAACTTCAAC 3150
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 3135 ATTTTAGCAACAAGTCTTGGCGGGTTCCGCAAGTTAGGTTTCTATTGTTTCAACATCAAC 3194
Query 3151 ATGTTTT-AAAAAGCAAAATATTTTATTTCTTTTCAAATTATTGAAGTTTGGTGG 3204
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3195 ATGTTTTTAAAAAGCAAAATATTTTATATCTTTTCAAATTATTGAAGTTTGGTGG 3249
> AT4G18770.1 | Symbols: MYB98, AtMYB98 | myb domain protein 98
| chr4:10311030-10313104 FORWARD LENGTH=1869
Length=1869
Score = 438 bits (237), Expect = 1e-121
Identities = 257/267 (96%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 2764 CTCTGATGCTCTTAACAAAGGTTATGAAGCTTGGGGACCTTTGTTTGGGAAAGTGTTTTT 2823
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1869 CTCTGACGCTCTTAACAAAGGTTATGAAGCTTGGGGACCTTTGTTTGGGAAGGTATTTTT 1810
Query 2824 CGCCTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGTCTTATGGGAAGACAAAA 2883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CGCCTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGTCTTATGGGAAGACAAAA 1750
Query 2884 CAGAACACCCACCATTGTTATTCTCTGGTCTATCTTGCTTGCTTCTGTGTTCTCACTTGT 2943
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1749 CAGAACACCTACTATTGTTATTCTCTGGTCTATCTTGCTTGCTTCTGTGTTTTCACTTGT 1690
Query 2944 TTGGGTTCGTATCAATCCTTTCGTCTCCAAAACCGATACGACCTCCCTTTCACAGAACTG 3003
|||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1689 TTGGGTTCGTATCAATCCTTTCGTCTCCAAAACCGATACGACTTCCCTTTCTCTGAACTG 1630
Query 3004 TCTTTTGATCGATTGCTAAAAGAAGAT 3030
||||||||||||||||||| |||||||
Sbjct 1629 TCTTTTGATCGATTGCTAAGAGAAGAT 1603
Score = 283 bits (153), Expect = 7e-75
Identities = 168/175 (96%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 3031 TTTTGGTTGTTTTATAAGTTTTCATATAGTTGCTTGAGCCACAAGTTAAGTAATGTTCTT 3090
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1565 TTTTGGTTGTTTTATAAATTTTCATATGGTTGCTTGAGCCACAAGTTAAGTAATGTTCTT 1506
Query 3091 ATTTTAGCAACAAGTCTTGGCGGATTCCGCAAGTTAGGTTTCTACTGTTTCAACTTCAAC 3150
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 1505 ATTTTAGCAACAAGTCTTGGCGGGTTCCGCAAGTTAGGTTTCTATTGTTTCAACATCAAC 1446
Query 3151 ATGTTTT-AAAAAGCAAAATATTTTATTTCTTTTCAAATTATTGAAGTTTGGTGG 3204
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1445 ATGTTTTTAAAAAGCAAAATATTTTATATCTTTTCAAATTATTGAAGTTTGGTGG 1391
> AT2G21770.1 | Symbols: CESA9, CESA09 | cellulose synthase A9
| chr2:9284837-9289536 FORWARD LENGTH=3308
Length=3308
Score = 351 bits (190), Expect = 2e-95
Identities = 730/981 (74%), Gaps = 75/981 (8%)
Strand=Plus/Plus
Query 2030 ATTCATGTCATTAGCTGCGGATACGAAGAGAAAACCGAATGGGGAAAAGA-AGTAGGATG 2088
||||| || |||||||| || ||||||||||||||||||||||||||||| | | || ||
Sbjct 2281 ATTCAGGTTATTAGCTGTGGCTACGAAGAGAAAACCGAATGGGGAAAAGAGATTGGG-TG 2339
Query 2089 GATTTACGGGTCGATCACGGAAGACATTTTGACGGGTTTCAAGATGCATTGTCGTGGATG 2148
|||||| || ||| |||| || || || || |||||||||||||||||||| | ||||||
Sbjct 2340 GATTTATGGCTCGGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCATGGATG 2399
Query 2149 GAGGTCTATTTACTGTATGCCATTAAG--ACCGGCTTTTAAAGGATCTGCTCCAATCAAT 2206
||| ||| | || ||||||||| ||| | ||||||| ||||| |||||||| || ||
Sbjct 2400 GAGATCTGTATATTGTATGCCA--AAGCGAGCGGCTTTCAAAGGTTCTGCTCCCATTAA- 2456
Query 2207 CTA-TCAGATAGGCTTCACCAGGTTCTGCGTTGGGCTCTTGGTTCGGTCGAGATCTTCCT 2265
|| || ||| | ||||| || ||||| |||||||| ||||| || |||||||| ||| |
Sbjct 2457 CTTGTCGGATCGTCTTCATCAAGTTCTACGTTGGGCACTTGGCTCTGTCGAGATTTTC-T 2515
Query 2266 T-AGCCGGCATTGTCCTCTATGGTACGGCTGCAGTGGAGGCCGTCTCAAGTTGCTCCAGA 2324
| || ||||||| ||| | |||||||| | | ||| || || | || | | | | |
Sbjct 2516 TGAGTAGGCATTGCCCTATTTGGTACGGTT--A-TGGTGGTGGTTTAAAATGGTTGGAAA 2572
Query 2325 GATTAGCTTATATCAACACTATTGTTTATCCCTTC-ACTTCT-TTGCCTCTTG-TTG-CT 2380
|||| |||| || ||| || |||| ||||| || || || || ||| ||| ||| ||
Sbjct 2573 GATTCTCTTACATTAACTCTGTTGTCTATCC-TTGGACATCCCTT-CCT-TTGCTTGTCT 2629
Query 2381 TACTG-TACTCTTCCTGCTATCTGCCTTCTCACCGGCAAATTCATCATCCCA-ACGCTAT 2438
|||| | | ||||| || || || || |||||||| ||||||||| |||| | | ||
Sbjct 2630 -ACTGCT-CACTTCCCGCCATTTGTCTACTCACCGGAAAATTCATCGTCCCTGA-GATAA 2686
Query 2439 CAAACCTA-GCAAGCATGCTGTTTCTAGGTC-TCTTCATATCAATCATCT-TAACAAGTG 2495
||| || || | || || || || | | | || || || || | |||| ||
Sbjct 2687 GTAAC-TACGCGGGTATACTCTTCCT-GCTAATGTTTATGTCCATTG-CGGTAACGGGTA 2743
Query 2496 CCCTCGAGCTTCGATGGAGCGGAGTGAGCA-TCGAAGACTTA-TGGAGAAACGAACAGTT 2553
|| || | | |||| || | | || | |||| || || ||||||||||| |||||
Sbjct 2744 TACTAGAAATGCAATGGGGCAAAAT-AGGAATCGATGA-TTGGTGGAGAAACGAGCAGTT 2801
Query 2554 TTGGGTTATTGGAGGCGTCTCAGCTCATCTCTTTGC-C-GTTTTCCAAGGATTCCTCAAA 2611
|||||| |||||||| ||||| | ||||| ||||| | |||| | |||| || ||||||
Sbjct 2802 TTGGGTCATTGGAGGAGTCTCTTCGCATCTATTTGCTCTGTTT-C-AAGGTTTACTCAAA 2859
Query 2612 ATGCTCGCTGGTCTC-GACACAAATTTCACAGTCACGTCGAAAACCGCAGACGATTTAGA 2670
| || || || || | ||| || ||||||||||| || ||| | ||||| ||| |||
Sbjct 2860 GTTCTTGCAGGAGTCAG-CACGAACTTCACAGTCACATCTAAAGCAGCAGATGATGGAGA 2918
Query 2671 ATTCGGTGAGCTCTACATCGTCAAATGGACAACTCTCTTGATCCCTCCGACATCACT-T- 2728
|||| ||||| ||||| ||||||||||| || | ||||| |||||||| | ||| |
Sbjct 2919 ATTCTCAGAGCTTTACATTTTCAAATGGACATCTTTGTTGATTCCTCCGAC-T-ACTCTG 2976
Query 2729 CTCATAATTAACTTGGTTGGAGTCGTTG-CTGGA-TTCTCTGATGCTCTTAACAAAGGTT 2786
|| || |||||| | ||||||||| ||| | ||| || || ||||| | || || || |
Sbjct 2977 CTGATCATTAACATCGTTGGAGTCATTGTC-GGAGTT-TCGGATGCGATAAATAACGGGT 3034
Query 2787 ATGAAGCTTGGGGACCT-TTGTTTGGGAAAGTGTT-TTT-CGCCTTTTGGGTGATTCTTC 2843
|||| |||||||||| || ||||||| | |||| ||| ||| ||| |||||||| |||
Sbjct 3035 ATGACTCTTGGGGACCGCTT-TTTGGGAGATTGTTCTTTGCGC-TTT-GGGTGATTGTTC 3091
Query 2844 ATCTT-TATCCATTCCTCAAAGGTCTTA-T-GGGAAGACAAAACAGAACACCCACCATTG 2900
|| || ||||| ||||||||||| ||| | ||||| |||| | ||| ||| ||||||
Sbjct 3092 AT-TTGTATCCGTTCCTCAAAGGG-TTACTTGGGAA-ACAAGATAGAGTACCAACCATTA 3148
Query 2901 TTATTC-TCTGGTCTAT-CTTGCTTGCTTCTGTGTT--CTCACTTGTTTGGGTTC-GTA- 2954
| ||| | ||||| || ||| |||||||| | || ||| ||||| |||| | | |
Sbjct 3149 T-ATTGGTTTGGTCGATTCTT-CTTGCTTCCATCTTGACTCTCTTGT--GGGT-CAG-AG 3202
Query 2955 TCAATCC-TTTCGTCTCCAAA 2974
||||||| ||| || ||||||
Sbjct 3203 TCAATCCGTTT-GTGTCCAAA 3222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159380377911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5