BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492990
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1443 0.0
> AT4G18690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G18680.1);
Has 522 Blast hits to 522 proteins in 39 species: Archae -
0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 513; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10282762-10283803
FORWARD LENGTH=1042
Length=1042
Score = 1443 bits (781), Expect = 0.0
Identities = 962/1046 (92%), Gaps = 25/1046 (2%)
Strand=Plus/Plus
Query 1 ATTCACGAACTAACCAACGAAGAGAGATGGCGACTAGTTCTTCGAGTTGTGGGATTGAAC 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATTCACGAACTAACCAACGAAGAAAGATGGCGACTAGTTCTTCGAGTTATGGGATTGAAC 60
Query 61 AACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTACAAGCTACACACATAGTTGATC 120
||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 61 AACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTGCAGGCTAAACACATAGTTGATC 120
Query 121 TCAAAGAAGCACTCACGAGTCATCGATCCAAAGACGATCACAAGCTTGAAGAAGTCGTAG 180
||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 121 TCAAAGAAGCACTCATGAGTCATCGATCCAAAGAAGATCACAAGCTTGAAGAACTCGTTG 180
Query 181 GTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCCGAGCTCTCTCGCCGAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCTGAGCTCTCTCGCCGAA 240
Query 241 GCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTTCTCTAGAGAACGGTTTACTATGGA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTCCTCTAGAGAACGGTTTACTATGGA 300
Query 301 TGGGAGGATGTCGTCCTTCGTCCTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAG 360
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAG 360
Query 361 CTGAAACGCAGCTTTCTCAGTATCTTCTCAAGGTCGATGAAAACGTCGAAGAAAACCAAG 420
| |||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||| |
Sbjct 361 CCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGATGAAAATGTCGAAGTAAACCATG 420
Query 421 GTGGTTCCATGAGTGATCTTAACGCGACGCAGCTTGCAAAAATCAATGATTTGCATATAC 480
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTGCAAAAATCAATGATTTGCATATAA 480
Query 481 AGGTTATAGAGAAGGAAGACAAGATAACAAAGAAATCGGCGAATCTGCAAGAGGATGTTG 540
||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 481 AGGTTATAGAGAAAGAGGACAAGATAACAAAGAAATCGGCGAATTTGCAAGAGAATGTTG 540
Query 541 CGGATATGCCTATCGCCATCGCGGCTTACGCCACGGATTTGGTGGATGGTGACGTGCTGG 600
||||||||||||| |||||||||||||| |||||||| ||| || ||||||||||| |||
Sbjct 541 CGGATATGCCTATAGCCATCGCGGCTTATGCCACGGACTTGATGAATGGTGACGTGGTGG 600
Query 601 TGGAGGATGCTTTAGATAAGCACGAGGAGGACATGGCGGTTTTAATGACGGAAGCTGATA 660
|||| ||||||||||||||| | ||||||| |||||||||||||||| |||||||||||
Sbjct 601 TGGAAGATGCTTTAGATAAGTATGAGGAGGGCATGGCGGTTTTAATGGTGGAAGCTGATA 660
Query 661 AGCTGAGGTTTGAGACGCTTAGGAAAATCGTGGAGGTTGTTACTCCGGTTCAAGCCGCTG 720
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || |
Sbjct 661 AACTGAGGTTTGAGACGCTTAGGAAGATCGTGGATGTTGTTACGCCGGTTCAAGCGGCGG 720
Query 721 AGTTTTTACTCGCCGGTAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAG 780
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTTTTTGCTCGCAGGGAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAG 780
Query 781 AAGAG-AGACGTTTTGAGTGTGCACGTACGGATGCAGCCGCTGCCACGGGAGGAGCAGGA 839
||||| | |||||||| ||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 781 AAGAGCA-ACGTTTTGGGTGTGTACGTACGGATGCAGCGGCTGCCACGGGAGGAGCGGGA 839
Query 840 ACCGAGAAGTCAAAGAGATCA-GCCACTTGTTGATGTGAGTGTGAGTTTGAAGTTGAATA 898
||||||||||||||||| ||| || |||||||||||||| | | ||||||||||
Sbjct 840 ACCGAGAAGTCAAAGAGGTCAAGC---TTGTTGATGTGAGTTT-A-----AAGTTGAATA 890
Query 899 TATATAACTTGTGTAATATTTGTCTAAGTAGAGATCATATATAAGATCGATCGTGTCTAA 958
|||||||||||||| ||||||||||| |||||||| | | | | ||| | || | |||
Sbjct 891 TATATAACTTGTGTTATATTTGTCTATGTAGAGAT-A-A-A-A---TCG-T-GT-T-TAA 939
Query 959 GTGTCTTTATGTGTAATATGTGTATGAGAGT-T-CGACTAGTTTCGAGATGATGCAAGCA 1016
||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||
Sbjct 940 GTGTCTTTATGTGTAATATATGTATGAGAGAGTGCGGCTAGTTTCGAGATGATGCAAGCA 999
Query 1017 TAAGCTTTTGCCTTTGTCTTATATAA 1042
||||||||||| ||||||||||||||
Sbjct 1000 TAAGCTTTTGCTTTTGTCTTATATAA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5