BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492991
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18680.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1011 0.0
AT4G18690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 601 3e-171
> AT4G18680.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G18690.1);
Has 361 Blast hits to 361 proteins in 33 species: Archae -
0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 353; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10281033-10281740
FORWARD LENGTH=708
Length=708
Score = 1011 bits (547), Expect = 0.0
Identities = 656/709 (93%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTACAAACTAAACACATAGAGGATCTCAAAGAAGCACTCATGTGTCAACAAAAC 60
||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1 ATGAGTTTACAAACTAAACACATAGATGATCTCAAAGAAGCACTCATGTGTCAACGAAAC 60
Query 61 AACGATCACAAAGTCGAAGACCTAGTTGGTAAAATCGTCAATGACTTCCAAACATATGCA 120
|||||| ||||| |||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 61 AACGATGACAAACTCGAAGACCTCGTTGGTAAAATCGTCAATGACTACCACACATATGCG 120
Query 121 AGAAAACGATCAGAGCTCTCGCACCGATGCTGCGCTAACTACTTTGCACCGTCATGGAAC 180
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 121 GGAAAACGATCAGAGCTCTCGTACCGATGCTGCGCTCACTACTTTGCACCGTCGTGGAAC 180
Query 181 TCTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGA 240
Query 241 CTTATATACGCGCTTTGTGGATCCCAGGCCGAAACTCTGCTTACTCAAAATCTTCTTCAT 300
||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||| |
Sbjct 241 CTTATATACGCACTTTGTGGATCCCAGGCCGAAACTCAGCTTTCTCAATATCTTCTTAAG 300
Query 301 ATCGATGAAAACTTTGACGTAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAG 360
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCGATGACGACTTCGATATAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAG 360
Query 361 CTTGAAAAAATCAATGAGTTGCATATGAAAGTAATAAAGAAAGAAGACAAGATTACGAAG 420
|||| |||| ||||||| |||||| || | ||||||||||||||||||||||||||||||
Sbjct 361 CTTGGAAAACTCAATGACTTGCATTTGGAGGTAATAAAGAAAGAAGACAAGATTACGAAG 420
Query 421 ACATCTGCGAATTTTCAAGACGATGTGGCGGATATGCCAATCGCGGATGTGGTGGTGCAT 480
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 ACATCTGCGAATTTTCAAGACGATGTGGCGGATTTGCCAATCGCGGATGTGGTG---CAT 477
Query 481 GGTGATGCAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGTATGGCGGTTTTACTG 540
| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 GCTGATGTAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGAATGGCGGTTTTACTG 537
Query 541 GCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGAGGTTATGACTCCG 600
||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 538 GCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGACGTTGTCACACCG 597
Query 601 GTTCAAGCGGCGGAGTTTTTGCTTGCCGGGAAAAGATTACA-CTTTTCGTTGCACGACCG 659
||||||||| |||||||||||||||||| ||||||||||| || | |||||||||||||
Sbjct 598 CTTCAAGCGGTGGAGTTTTTGCTTGCCGGAAAAAGATTACAGCTGT-CGTTGCACGACCG 656
Query 660 GGGAAGAGCTAGAGCAGATGTTTGTGGAGGAGTAGGGGACGACGCCGTC 708
|||||||| |||||||||||||||||||||||| |||| || ||| |||
Sbjct 657 GGGAAGAGTTAGAGCAGATGTTTGTGGAGGAGTGGGGGGCGCCGCTGTC 705
> AT4G18690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G18680.1);
Has 522 Blast hits to 522 proteins in 39 species: Archae -
0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 513; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10282762-10283803
FORWARD LENGTH=1042
Length=1042
Score = 601 bits (325), Expect = 3e-171
Identities = 573/689 (83%), Gaps = 32/689 (5%)
Strand=Plus/Plus
Query 14 CTAAACACATAGAGGATCTCAAAGAAGCACTCATGTGTCA---A-CAAAACAACGATCAC 69
|||||||||||| ||||||||||||||||||||| |||| | | ||| || ||||||
Sbjct 103 CTAAACACATAGTTGATCTCAAAGAAGCACTCATGAGTCATCGATCCAAAGAA-GATCAC 161
Query 70 AAAG-TCGAAGACCTAGTTGGTAAAATCGTCAATGACTTCCAAACATATGCAAGAAAA-C 127
||| | ||||| || |||||||||||||||||||||||||||| ||| | ||||| |
Sbjct 162 -AAGCTTGAAGAACTCGTTGGTAAAATCGTCAATGACTTCCAAAAATACACC-GAAAAAC 219
Query 128 GATCAGAGCTCTCGCACCGATGCTGCGCTAA-CTACTTTGCACCGTCATGGAACTCTCCT 186
|||| |||||||| | |||| ||||| | || ||||||||||||||| ||||||||||||
Sbjct 220 GATCTGAGCTCTCTCGCCGAAGCTGCTC-AAGCTACTTTGCACCGTCGTGGAACTCTCCT 278
Query 187 ATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGACTTATA 246
|||||||| || | ||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 279 CTAGAGAACGGTTTACTATGGATGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTATT 338
Query 247 TACGCGCTTTGTGGATCCCAGGCCGAAACTCTGCTTACTCAAAATCTTCTTCATATCGAT 306
||| | |||||||||||||| |||||||| | |||| |||| ||||||| | ||||||
Sbjct 339 TACTCTCTTTGTGGATCCCAAGCCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGAT 398
Query 307 GAAAACTTT-GACGTAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAGCTTGA 365
||||| | | || |||||||||||||||| |||||||||||| | |||| | |||||||
Sbjct 399 GAAAA-TGTCGAAGTAAACCATGGTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTGC 457
Query 366 AAAAATCAATGAGTTGCATATGAAAG-TAATAAAGAAAGAAGACAAGATTACGAAGACAT 424
|||||||||||| |||||||| |||| | ||| ||||||| |||||||| || |||| ||
Sbjct 458 AAAAATCAATGATTTGCATAT-AAAGGTTATAGAGAAAGAGGACAAGATAACAAAGAAAT 516
Query 425 CTGCGAATTTTCAAGACGA-TGTGGCGGATATGCC-A-A----TCGCGG---ATGT---G 471
| |||||||| ||||| || ||| ||||||||||| | | |||||| ||| |
Sbjct 517 CGGCGAATTTGCAAGA-GAATGTTGCGGATATGCCTATAGCCATCGCGGCTTATGCCACG 575
Query 472 G--TGG-TGCATGGTGATGCAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGTATG 528
| | | || ||||||| | | |||||| |||||||| |||||| |||| ||||| |||
Sbjct 576 GACTTGATGAATGGTGACGTGGTGGTGGAAGATGCTTTAGATAAGTATGAGGAGGGCATG 635
Query 529 GCGGTTTTACTGGCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGAG 588
||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 636 GCGGTTTTAATGGTGGAAGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATCGTGGAT 695
Query 589 GTTATGACTCCGGTTCAAGCGGCGGAGTTTTTGCTTGCCGGGAAAAGATTACACTTTTCG 648
||| | || |||||||||||||||||||||||||| || ||||||||||||||| | ||
Sbjct 696 GTTGTTACGCCGGTTCAAGCGGCGGAGTTTTTGCTCGCAGGGAAAAGATTACACATATCA 755
Query 649 TTGCACGACCGGGGAAGAGCTAGAGCAGA 677
|||||||| ||||||||| ||||| |||
Sbjct 756 TTGCACGAGTGGGGAAGAGTTAGAGAAGA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5