BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492999
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18596.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1046 0.0
AT5G45880.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 566 1e-160
> AT4G18596.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr4:10239017-10239851 FORWARD LENGTH=739
Length=739
Score = 1046 bits (566), Expect = 0.0
Identities = 639/672 (95%), Gaps = 13/672 (2%)
Strand=Plus/Plus
Query 1 AGTTGTCCTCTTCTCTAACATCTC-AACAAAGAAAACGATTACAAAAGAGAAGAGGTATC 59
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTGTCCTCTTCTCTAACATCTCAAACAAAGAAAACGATTACAAAAGAGAAGAGGTATC 60
Query 60 -AAAA-AAGACCAGAATCTTTTAACATTTTGAAACAAATGGCGTCCAAAGCCATCTTCTT 117
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAAAAGAAGACCAGAATCTTTTAACATTTTGAAACAAATGGCGTCCAAAGCCA---TCTT 117
Query 118 CTTCTTCTTTGTCTCCGCCGTGTGCCTGTCCTCTCTCGCCGGCGTGGCCATCGCTGACGC 177
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 118 CTTCTTCTTTGTCTCTGCCGTGTGCCTGTCCTCTCTCGCCGGTGTGGCCATCGCTGATGC 177
Query 178 CGATGACTTTGACCGTTTCCAAATTCAAGGATCGGTTTATTGTGACACATGCCGTGTCCA 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 CGATGACTTTGACCGTTTCCAAATTCAGGGATCGGTTTATTGTGACACATGCCGTGTCCA 237
Query 238 ATTCGTTACCCGCCTCAGCAAGTTCCTTGAAGGAGCGAAAGTGAAGCTAGAGTGCAGGAG 297
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 238 ATTCGTTACCCGTCTCAGCAAGTTCCTTGAAGGCGCGAAAGTGAAGCTAGAATGCAGGAG 297
Query 298 CAGAACAAACGGAACCGTAACATTGACAAAAGAAGCCGTCACGGACAAAACAGGGAGCTA 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 CAGAACAAACGGAACCGTAACATTGACAAAAGAAGCCGTAACGGACAAAACAGGGAGCTA 357
Query 358 CAGAATGGAAGTGACCGGTGACCACGAGGAGGAAGTTTGCGAGCTTGTGCTCGTCGAATC 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 CAGAATGGAAGTGACCGGTGACCATGAGGAGGAAGTTTGCGAGCTTGTGCTCGTCGAATC 417
Query 418 ACCAGACAGTGGTTGCAGTGACGTTAGCAAAGAGGCTTACCTACGTAACGCTGCTAAGAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 ACCAGACAGTGGTTGCAGTGACGTTAGCAAAGAGGCTTACCTACGTAACGCCGCTAAGAT 477
Query 478 CAGCTTGACCGCGAATGATGGAATCGTCTCTCACGAGACACGTATTGTTAACCCTCTCGG 537
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 CAGCCTGACCGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACCCTCTCGG 537
Query 538 CTTCATGGTT-AAGACGCCGTCACCTGAATGTCCCGCTGCCTTT-AAGGAGCTCGGAATC 595
||||||||| || || |||||| |||||||||||||||| ||| ||||||||||| |||
Sbjct 538 TTTCATGGTTCAA-ACTCCGTCAGCTGAATGTCCCGCTGC-TTTCAAGGAGCTCGGGATC 595
Query 596 GTTCCTGATGTCACCTTCTAAATTTAATGACGACTTCAAGATCGTCGTTTAAGTGTCATC 655
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 596 GTTCCTGATGTCACCTTCTAAATTTAATGAT---TTCAAGATCGTCATTTAAGTGTAATC 652
Query 656 TATTGTTTGTTT 667
||||||||||||
Sbjct 653 TATTGTTTGTTT 664
> AT5G45880.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr5:18609664-18611166 REVERSE LENGTH=895
Length=895
Score = 566 bits (306), Expect = 1e-160
Identities = 456/529 (86%), Gaps = 7/529 (1%)
Strand=Plus/Plus
Query 93 AAATGGCGTCCAAAGCCATCTTCTTCTTC-TTC-TT-T-GTCTCCGCCGTGTGCCTGTCC 148
||||||| |||||||| ||||||||| || ||| || | |||||||||||||| ||||
Sbjct 99 AAATGGCTTCCAAAGCTATCTTCTTC-TCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCT 157
Query 149 TCTCTCGCCGGCGTGGCCATCGCTGACGCCGATGACTTTGACCGTTTCCAAATTCAAGGA 208
||||| || || | ||| |||||| || || ||||| || |||||||| |||||||||
Sbjct 158 TCTCTGGCAGGTTTCGCCGCCGCTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGA 217
Query 209 TCGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGCCTCAGCAAGTTCCTTGAA 268
|| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 218 TCAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAA 277
Query 269 GGAGCGAAAGTGAAGCTAGAGTGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAA 328
|| |||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 278 GGCGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCATAACATTGACCAAA 337
Query 329 GAAGCCGTCACGGACAAAACAGGGAGCTACAGAATGGAAGTGACCGGTGACCACGAGGAG 388
||||| || || ||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 338 GAAGCTGTTACCGACAAAACAGGAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAA 397
Query 389 GAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAA 448
||||||||||||||||| | ||| ||||||||||||||||||||||||| || |||| |
Sbjct 398 GAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACA 457
Query 449 GAGGCTTACCTACGTAACGCTGCTAAGATCAGCTTGACCGCGAATGATGGAATCGTCTCT 508
||||||||| |||||||||| ||||||||||| || || |||||||| |||||||||||
Sbjct 458 GAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCC 517
Query 509 CACGAGACACGTATTGTTAACCCTCTCGGCTTCATGGTTAAGACGCCGTCACCTGAATGT 568
||||||||||||||||||||||||||||| ||||||||| |||| || | |||| |||
Sbjct 518 CACGAGACACGTATTGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGT 577
Query 569 CCCGCTGCCTTT-AAGGAGCTCGGAATCGTTCCTGATGTCACCTTCTAA 616
|| ||||| ||| |||||||| || || || ||||| || || ||||||
Sbjct 578 CCTGCTGC-TTTCAAGGAGCTTGGTATTGTCCCTGACGTAACATTCTAA 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5